AMCG00000550


Basic Information

Item Value
gene id AMCG00000550
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18411443 ~ 18419576 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000550
ATGACGGGGGTGCGGGCCGGCGCTTCCCGGGTGAAAGGTCGCGGGGCGGGCGGGAGTGAGGGCAGCAGCCCGGCAGTGTGGCGGAAGTGCGCCTCCGGGACGCGGCGCAAAACACAAGGGGCCGGCGCTGCACATCGCGCTGATCTCGCCAAATCCTCACCGTCTCCCGCAGACCGAGCGACCGAGCGACGCGCAGGCAGGCGGGCAGGCAGGCGGAGGAGTGAGTGTGTAGCCCGGCGTGCATTCGCTGCTTTCACCGCTAGCCTGGGGGTCTTGGTCGGGGTGGGCTGCTGTCTGCCAGCCACACACAACAACGCTGGCGTATCATCACCTGCGCGATTgcGATGGGGCAGTGGGCCGCAGCCCAGTGGACGGGATGACTGGTGCCTCCTGCTGGCGCTGATCAGGATGGGCCCGGACGTGCCACTGCTCAATGAGTATAAGCAGGACTTCTTCTGGAAGCGGTTCCCCCAGACCGTTCTGGGGGGCCCCCGCTTCAAGCTGGGCTTCTGCGCCCCACCGTACGTCTACGCCAACCAGGCGATCCTGTTCCTGGCGCCCTGGCTGCTCGGGGGGGCGGCCACGCTGCTGCACCAACTGCGGCTGCTGGAGGACTACCAGGCGGCCGCGCTGGCGGGGGGGTTGATGCTGTGCGTGGCGCTGGGGGTGCAGGCGCTGTGCGCGTGGGTGCTGCGCAGGGCGGTGCCCGTGCAGCGGCTGCAGACCCCCAGCATCCTGGCCGACGAGGAGGAGGTGGAGTTCGCCGGCTGCGCCAGTGCCGACACCGTCCGCTTCATTGTGCCCGGGAAGAAGTTTGCTGCGAACATCGTGCTGCACGCCGCCCTGGCGGGGGCTCTGTGCGGGCTGGGCACCTGGTACCTGCTGCTGGACCGGCTGGTGGCGCTGTTCAGCGGCACCGGGGCGGCCGTGCCGGTGTTCGTGCTGAGCTGGGTCACCCTGTGCATCGCCGAGTACTCACTGGTCATCAACACGGCCACCGAGACGGCCACCTTCCAGCCGCAGGATGCCTACGAGATCACACCCCTGACGCGGCCGCTCTACGCGTTTGCCTTCATCGCGGTGGACCTGGCGCACAGGTTTGTGGCTACAGCTCCAGAGCTGCAGCAGACCAGCCAGGTGCTGCACGTGGTGTTCCTGTTCCTGCCGCTGCTGTGGGCGCTGGGCGTGCTGTCCCCCGTGGACGCCCTGTTCCTGTGGGGCATGGAGCAGGTGCTGGTGTTCGGGCTGGGCGGCTCCCCCATGTCCACCGACCTCAGgctgctgctgatgttCCTGGTGTCGGTGGCCGTGGCCGTGTGTGCCGCCTTCATCCCGAGCGCACTGGGGGTCGTCCTCTTCATCACTGCCGCCGGCTTCCTGCTCAGCCTGGACCTCAGCCAGGTGCCGGGGCTGCTGAGGCCCTGCGGGACAGGCGTGGTGGGGATGGGGGACGGGCGCTCGGGGCCGCCACGCTCCCTGGGCTGGACACCGGGCTGGAGGGAGCTGCTGCTGCATGGTGCCCTGCTGCTGGCCGCACTGGCCGAGGCCGGGCTCCTGCAGGTGTACGTCGGGCCCATCCAGGGGTCCGCCGCCGACCTCCAGGCCACTGTCAGCTACATCCTGCTCGGCCTCCTCGTCATCAGCTGGGCGCTGGGAGAGGTGCAGGGTGCCTATCTCTTGTGGGGTGTCTTCCGCAACCCCCTGTACCCCAGGCAGACAGGCAACATCGACGCATTGGAGAAGGAGCGGCGCCGGCTCCGGAGGACGGGCTTGGTGCGCAGGGTGCTGCTCGGACTGGTGTCTCCGTTGGCCATGATTGCGTTCCTGGCTGTGGACGAATCTCTGCAGCGGCTCCACAGCGCCGCGCTGAGCGTGGGCTTCACTCGGGCGTTCAGGGTGGTGTGGCAGAGCACCGAGGACGCCCTGCTGCAGATGTGCGTGGTGGCCGTGGTGCGGCTGACAGCCAGGAGCGCCAACTGGGTGTGGTGGGACGATCTCGGCACTGGGATCCAGCTGCTGCTGGTGGGCCTGGCGCTGGACCGGCTGGGGCAGTTGCGCTGGAAGCTGCAGTTCCTGGTGACAGTGCTGGTGACCTCGTGGACGGAGAAGAAGCAGCGGCGCCAGTCCGCGGCCGCCCTGCTGGCGCTGAACGGCATGCTGTGGCCGGTGCTGCTGGCCGTGCTGGGCCTGTCTGCCCTGCTGGCCGCGCCGCTGCTGCCCCTGTTCACGCTGCCCGTCTTCCTGGTGGGCTTCCCCCGGCCCCTGCGCAGCTGGCCCGGCCCGGTGGGCACCACCGCCTGCTCCTGCCCCGACTCCATCTACTACCAGCAGATGGAGTGGAGCCTGGCAGACGCCTTCCACACCGCTTTCGCCACAGGAGCCCTAGGGTCGCCCGCCCCGGGGTCGCACTTCCTGGGCCGCTTCCAGGACCGGGTCATGTGGATCGTGGTTCTGGAGAGAGGTTACAGCTACTGCTCTCTCAATATTAAGGGCCTGGAGCTGCAGGAGACTTCGTGCCACACTGCGGAGGCGCGGCGTGTGGACGAGGTGTTCGAGGCGGCCCTCGAGGGCCCGGGCCGCTGGGGCCTGAACAAGCACTTTGCCAACATGCTGACGCCCTGCGCCGCGCTGCCCGTGCGCCTGTACTCCGACGCCCGCAACGTGCTGACCGGCATCATCGACTCACACCAGCACCTGCGGCAGCTGAAGGACGACTTCCTCAGGGTGCTGCTGTGGGTGCTGCTGCGGCACGGCGCCTCGCAGGCCGGGGAGGTGGCGGCGGACGACCGGAGGAGCGCCAGGCCGGCCTGGATGGGCGTGGAGGTCGGCGTCACCGCGGCCCAGAGCCGCTTGACGGGGCGGCTGAGGGGCGGCTCCAGTCTGAACTCGGACAACCTGGACGACTGGTCTGATGACGACGACGACCTCTTTGGGCCGGGCGCCGGCATGGCTCTGCGGGGGGGCGAGGCGGAACGGGCCACCACCTGCCTGCCCGGCTCGGTGGAGATGCACAGTCTGTTCGGGACCTCTGTCGGCGCGGGGCCCCTCAGGGCGCTGGGGCTcccggcagtggacaggggtgggggggccgGGGAAGCGTCCCGCTCCGGTGCTCCGCCCAGAGTGGTCTTCGGCTCCCCACACGCCGAGCGGCTCGGCCTGCCCCGGGAGTGGCGCGCCGGGCCCCTTCCTGCCCCGCGCCTGCAGCAGCTCCACGCCGCCTTCCCGGAGGACTGGTACCAGTTGGTGCTGGGCCAGCCGGCGCTGGCGGGGCAGGGGGAGCGGGCCGAGGGCGTGGCGCGGGCCCTGCGGGGGGATGTGGTGCTCAGGGAGCTGTACGCACAGGTGCTGCTGAGCTGCTACGGCGTGACACTGGGCGTGGAGTCCACCATCGTCAGCCCCAGCTATGTGTACCGGGCGTACTGCGGGGACGTGCCCTGGACGCCCGGCCTGGACTGGCTGACCACAAACGTGCAGCTCTTCCAGCTCGTCCTCAAGGCCTTCAGGTTCAGCTTCAAGCTGCTGTTCGACCAGGCCAGCCTGGGGCCGCTGGAGGGCCCAGAGGAGCTGCTGGGCTGGCTGGAGGAGTGCGAGCGGGACTGGTACGTGGGCCTGGTGTCGGACAGCGGCTGGCAGGACGCCGTGCTGCAGGAGAAGCCCTTCCTCTTCTCGCTGGGCCACGACCTCACCATGGGCACCTACACCGGTCGGGTGCTGACACTGCGGGAGCTGCCGGTGCAGGTGGGCCGTCTGAACGCGGAGGGCGTGCGCGGCCAGTGGGCCAACCTGTCCTGGGAGCTGCTGTACGCCACCAACGACGACGAGGAGCGCTACAGCATCCAGGCGCACCCCGTCCTGCTGCGCAACCTCACCGTGCAGGCCGCCGACCCCCCACTGGGCTACCCCATCCACTCGTCCCGCCCGCTGCACCTGCCCTGTTTCTGACCCCGCCCGGGCCCCCAGGGCCCCCAGGGGCCACGAGGCAATGCGACGGAGAGGCGAGGATCGGCCCAGTCCGGTTAATGGCAGTGAGCCCGAATGACGCAAATTGTCAAGGTTTTGGGTTTTGGAGGTAAAAGGCTTCCTGGCCCTGCAgcctgcgagagagagagagagtgcaaggGACGTTTACAAAAAGGATTCCGTTTTTATACGAGAGAGAAATCTCCTTTCAGCACACACTACAGCACGGGTAACACAAGGGAAACGTTCGCTATTACCGTTTAACACTCTATTCCCCGTCGCCGTGATTCCCGTTCGGCCGAAAGGAAACCTACAGTAACAGGAAGTGGACGAGTAGATCGCTGCCCACTTGATACCAGAGCCCGGCCCCTCTGCACCCCACTGTCTCTTGTTACTGTAGATCTCTGCCCACTTTATACCGGACCCTCGGGGGGCCGCGGACCCTCCAGGACCAACGAGCTGCTGCAGTCCGTCCCCCGTCCATCCCACGATCGAACACCGTTTCAGTGTCAATCACAACACACACGCGTTTGGCTTTTATTAAAGTCAAATTAACGGTTTggtattttttgtacattttaagcTGAATAATGTACCATTTGTTGATCAAAAGGTACTTCAACTATAATATCCTCATATCCCGAGTGTGACGTTTTTGTTTCGAGACACAACCCCCGTGGGAAAGCCGTCTCTCTGCTGCCGAGACTCACTCCCTCACAGCTCCGGTGCTGACCCAGGACATTttagtatattgttttttctaaaatatggaatgtgtttttctactttttatACCCTCCTACGGGGACGGGCGCTCGTTAAACGCAGGGGAAACCGCAAACAGAGCGACTCTAAACTCCGCTAAATCCACTAAAGAACTTCTGTTAATTGCACTCTGTCGTTATTTAACGAGCACACGTCCGCTCACGCACTGAGgcgagaaaaagaaaaaaaaaaaaaaaaaaaagacacaaaaaaacactcaacACTGTGCCTTTGGCTTTAATTGTGTCACTCTAATACAGTTGCTAATTGTTATCCTCTGCCTTCACTTCTCTCCCTCGTCTCATTATCTCATTGTTTTCCGTTTGTTTGCTGTGTCACAACTTTctgtaaatagatttttttaagctGTCGTTCCTGtaaagtatgtatttgtatataaacgCAGACAcacttgtatttatattataggCTTTTGAAAGAAGTTTCggattcttattttattaaaatgttatgtattttcaaaatgttgacATGAGTGATGCCCTGGGTGTCTGTTCTACCCTACCGTACCCTACCCTGCCCTTCCCTGG
>TU190161
AGGGAGCTGTACGCACAGGTGCTGCTGAGCTGCTACGGCGTGACACTGGGCGTGGAGTCCACCATCGTCAGCCCCAGCTATGTGTACCGGGCGTACTGCGGGGACGTGCCCTGGACGCCCGGCCTGGACTGGCTGACCACAAACGTGCAGCTCTTCCAGCTCGTCCTCAAGGCCTTCAGGTTCAGCTTCAAGCTGCTGTTCGACCAGGCCAGCCTGGGGCCGCTGGAGGGCCCAGAGGAGCTGCTGGGCTGGCTGGAGGAGTGCGAGCGGGACTGGTACGTGGGCCTGGTGTCGGACAGCGGCTGGCAGGACGCCGTGCTGCAGGAGAAGCCCTTCCTCTTCTCGCTGGGCCACGACCTCACCATGGGCACCTACACCGGTCGGGTGCTGACACTGCGGGAGCTGCCGGTGCAGGTGGGCCGTCTGAACGCGGAGGGCGTGCGCGGCCAGTGGGCCAACCTGTCCTGGGAGCTGCTGTACGCCACCAACGACGACGAGGAGCGCTACAGCATCCAGGCGCACCCCGTCCTGCTGCGCAACCTCACCGTGCAGGCCGCCGACCCCCCACTGGGCTACCCCATCCACTCGTCCCGCCCGCTGCACCTGCCCTGTTTCTGACCCCGCCCGGGCCCCCAGGGCCCCCAGGGGCCACGAGGCAATGCGACGGAGAGGCGAGGATCGGCCCAGTCCGGTTAATGGCAGTGAGCCCGAATGACGCAAATTGTCAAGGTTTTGGGTTTTGGAGGTAAAAGGCTTCCTGGCCCTGCAgcctgcgagagagagagagagtgcaaggGACGTTTACAAAAAGGATTCCGTTTTTATACGAGAGAGAAATCTCCTTTCAGCACACACTACAGCACGGGTAACACAAGGGAAACGTTCGCTATTACCGTTTAACACTCTATTCCCCGTCGCCGTGATTCCCGTTCGGCCGAAAGGAAACCTACAGTAACAGGAAGTGGACGAGTAGATCGCTGCCCACTTGATACCAGAGCCCGGCCCCTCTGCACCCCACTGTCTCTTGTTACTGTAGATCTCTGCCCACTTTATACCGGACCCTCGGGGGGCCGCGGACCCTCCAGGACCAACGAGCTGCTGCAGTCCGTCCCCCGTCCATCCCACGATCGAACACCGTTTCAGTGTCAATCACAACACACACGCGTTTGGCTTTTATTAAAGTCAAATTAACGGTTTggtattttttgtacattttaagcTGAATAATGTACCATTTGTTGATCAAAAGGTACTTCAACTATAATATCCTCATATCCCGAGTGTGACGTTTTTGTTTCGAGACACAACCCCCGTGGGAAAGCCGTCTCTCTGCTGCCGAGACTCACTCCCTCACAGCTCCGGTGCTGACCCAGGACATTttagtatattgttttttctaaaatatggaatgtgtttttctactttttatACCCTCCTACGGGGACGGGCGCTCGTTAAACGCAGGGGAAACCGCAAACAGAGCGACTCTAAACTCCGCTAAATCCACTAAAGAACTTCTGTTAATTGCACTCTGTCGTTATTTAACGAGCACACGTCCGCTCACGCACTGAGgcgagaaaaagaaaaaaaaaaaaaaaaaaaagacacaaaaaaacactcaacACTGTGCCTTTGGCTTTAATTGTGTCACTCTAATACAGTTGCTAATTGTTATCCTCTGCCTTCACTTCTCTCCCTCGTCTCATTATCTCATTGTTTTCCGTTTGTTTGCTGTGTCACAACTTTctgtaaatagatttttttaagctGTCGTTCCTGtaaagtatgtatttgtatataaacgCAGACAcacttgtatttatattataggCTTTTGAAAGAAGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000550 True 5279 mRNA 0.64 11 18411443 18419576
TU190161 False 1847 TUCP 0.54 3 18417180 18419471

Neighbor

gene id symbol gene type direction distance location
AMCG00000551 NA coding upstream 6646 18392416 ~ 18404797 (+)
AMCG00000555 LOC104966444 coding upstream 74996 18308336 ~ 18336447 (+)
AMCG00000562 zfyve21,LOC106610961 coding upstream 159779 18245088 ~ 18251664 (+)
AMCG00000563 klc1 coding upstream 170501 18222486 ~ 18240942 (+)
AMCG00000561 NA coding upstream 206463 18201482 ~ 18204980 (+)
AMCG00000552 ppm1a,LOC106610975 coding downstream 9339 18428915 ~ 18433601 (+)
AMCG00000553 six6,six6a,LOC107743981,LOC106598791,LOC107588601 coding downstream 60795 18480371 ~ 18483206 (+)
AMCG00000571 NA coding downstream 149589 18569165 ~ 18583738 (+)
AMCG00000579 prkch,LOC100380676,LOC107675581,LOC107548619 coding downstream 182974 18602550 ~ 18606788 (+)
AMCG00000580 NA coding downstream 191331 18610907 ~ 18613346 (+)
G151052 NA non-coding upstream 26397 18384600 ~ 18385046 (+)
G151050 NA non-coding upstream 51151 18359247 ~ 18360292 (+)
G150953 NA non-coding upstream 326756 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 330102 18078114 ~ 18081341 (+)
G150913 NA non-coding upstream 348097 17994559 ~ 18063346 (+)
G151217 NA non-coding downstream 439687 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 443448 18863024 ~ 18868044 (+)
G151226 NA non-coding downstream 500345 18919921 ~ 18921366 (+)
G151310 NA non-coding downstream 711049 19130625 ~ 19130890 (+)
G151339 NA non-coding downstream 885670 19305246 ~ 19307462 (+)
G150976 NA other upstream 252122 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 651861 17748510 ~ 17759582 (+)
G150811 NA other upstream 862935 17545454 ~ 17548508 (+)
G150750 NA other upstream 1473161 16935993 ~ 16938282 (+)
AMCG00000514 NA other upstream 1597078 16811453 ~ 16814365 (+)
AMCG00000573 NA other downstream 70275 18489851 ~ 18530757 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other downstream 114893 18534469 ~ 18565627 (+)
G151522 gpr135,LOC107564991 other downstream 1549763 19969339 ~ 19972015 (+)
G151676 NA other downstream 2422362 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 3107294 21526870 ~ 21533538 (+)

Expression


Co-expression Network