AMCG00000581


Basic Information

Item Value
gene id AMCG00000581
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18622402 ~ 18623132 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000581
ATGAGCCCCTTCAGTCTCGGATCACAGCAGCTGAATCTCTCTGTACAATCTCGCAGCGGCCGGAGAGGTCAAACCCTTAGACCAGACCGCCCAGACCGCAGCACTGGTCCGGACTGCACCCAGCTGAGTCGGACTGAGTCGGACTGGGACCGATCCAAATGTCACCAACTACCTGGAGCCCCAttccTGACGAAGAACCCCGCCCGCCGCCTGGGCTGCATCTCAGCCGAGGGGGGTGAGGGTGCCATCCTGGTCCACCCTTTCTTCAAGGAGATCGACTGGGAGAGATTGAACCTCCGTGAGATGGAGCCGCCTTTCAGACCCCGGATCAAAACGGCCGAAGACGTGAACAACTTTGACCCGGACTTCACCCGGGAGGAGCCCACTCTGACCCCCATCGAGGACCCCATGATCCCGTCCGTCAACCAGGAAGAGTTCAGACACTTCTCCTTCACCGCCCCGGAGCTGCTGGATGTGTAG

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000581 True 480 mRNA 0.60 3 18622402 18623132

Neighbor

gene id symbol gene type direction distance location
AMCG00000580 NA coding upstream 9056 18610907 ~ 18613346 (+)
AMCG00000579 prkch,LOC100380676,LOC107675581,LOC107548619 coding upstream 15614 18602550 ~ 18606788 (+)
AMCG00000571 NA coding upstream 38664 18569165 ~ 18583738 (+)
AMCG00000553 six6,six6a,LOC107743981,LOC106598791,LOC107588601 coding upstream 139196 18480371 ~ 18483206 (+)
AMCG00000552 ppm1a,LOC106610975 coding upstream 188801 18428915 ~ 18433601 (+)
AMCG00000577 NA coding downstream 12993 18636125 ~ 18652518 (+)
AMCG00000578 NA coding downstream 31501 18654633 ~ 18658937 (+)
AMCG00000568 NA coding downstream 36985 18660117 ~ 18678114 (+)
AMCG00000569 NA coding downstream 55665 18678797 ~ 18690095 (+)
AMCG00000587 rhoj,LOC107707080,LOC108257930,LOC107701469,LOC107743974 coding downstream 185482 18808614 ~ 18824678 (+)
G151052 NA non-coding upstream 237356 18384600 ~ 18385046 (+)
G151050 NA non-coding upstream 262110 18359247 ~ 18360292 (+)
G150953 NA non-coding upstream 537715 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 541061 18078114 ~ 18081341 (+)
G150913 NA non-coding upstream 559056 17994559 ~ 18063346 (+)
G151217 NA non-coding downstream 236131 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 239892 18863024 ~ 18868044 (+)
G151226 NA non-coding downstream 296789 18919921 ~ 18921366 (+)
G151310 NA non-coding downstream 507493 19130625 ~ 19130890 (+)
G151339 NA non-coding downstream 682114 19305246 ~ 19307462 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other upstream 56775 18534469 ~ 18565627 (+)
AMCG00000573 NA other upstream 91645 18489851 ~ 18530757 (+)
AMCG00000550 NA other upstream 202826 18411443 ~ 18419576 (+)
G150976 NA other upstream 463081 18153864 ~ 18159321 (+)
AMCG00000525 NA other upstream 862820 17748510 ~ 17759582 (+)
G151522 gpr135,LOC107564991 other downstream 1346207 19969339 ~ 19972015 (+)
G151676 NA other downstream 2218806 20841938 ~ 20843463 (+)
AMCG00000661 NA other downstream 2903738 21526870 ~ 21533538 (+)

Expression


Co-expression Network