G149359 (LOC103376870)


Basic Information

Item Value
gene id G149359
gene name LOC103376870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 9719947 ~ 9776988 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU187938
aattatacactcacctaaaggattattaggaacaccatactaatactgtgtttgaccccctttcgccttcagaactgccttaattctacgtggcattgattcaacaaggtgctgaaagcattctttagaaatgttggcccatattgataggatagcatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccGAGAATTTAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU187938 True 437 lncRNA 0.44 2 9719947 9776988

Neighbor

gene id symbol gene type direction distance location
AMCG00000283 NA coding upstream 14498 9688747 ~ 9705449 (+)
AMCG00000280 NA coding upstream 159471 9557518 ~ 9560476 (+)
AMCG00000288 l2hgdh coding upstream 211023 9501693 ~ 9508924 (+)
AMCG00000287 cdkl1 coding upstream 218579 9487917 ~ 9501368 (+)
AMCG00000277 LOC106517965,LOC107602930 coding upstream 292405 9414677 ~ 9427542 (+)
AMCG00000293 NA coding downstream 51101 9828089 ~ 9840429 (+)
AMCG00000294 smoc1 coding downstream 87999 9864987 ~ 9876944 (+)
AMCG00000292 NA coding downstream 134148 9911136 ~ 9920082 (+)
AMCG00000306 arg2 coding downstream 225733 10002721 ~ 10010111 (+)
AMCG00000307 NA coding downstream 286823 10063811 ~ 10072297 (+)
G149253 NA non-coding upstream 434796 9280063 ~ 9285151 (+)
G149172 psmc6 non-coding upstream 703796 9013371 ~ 9016151 (+)
G149059 NA non-coding upstream 1046161 8668980 ~ 8673786 (+)
G149056 NA non-coding upstream 1134980 8584488 ~ 8584967 (+)
G149055 NA non-coding upstream 1135940 8583648 ~ 8584007 (+)
G149416 slc39a9,LOC107721951,LOC107664419 non-coding downstream 180725 9957713 ~ 9962571 (+)
G149415 NA non-coding downstream 196060 9973048 ~ 9975172 (+)
G149450 NA non-coding downstream 244434 10021422 ~ 10021853 (+)
G149454 NA non-coding downstream 252706 10029694 ~ 10030786 (+)
G149455 NA non-coding downstream 257586 10034574 ~ 10035072 (+)
AMCG00000281 cpsf2,LOC106608196 other upstream 128859 9561557 ~ 9591088 (+)
AMCG00000286 sos2 other upstream 173536 9514822 ~ 9546411 (+)
AMCG00000285 map4k5 other upstream 233258 9440061 ~ 9486689 (+)
AMCG00000249 acta1,actc1,LOC103383882,LOC105024319 other upstream 1134674 8579717 ~ 8585273 (+)
AMCG00000251 NA other upstream 1144823 8572936 ~ 8575124 (+)
G149424 NA other downstream 192336 9969324 ~ 9970801 (+)
G149525 LOC100846954,LOC107575789 other downstream 757602 10534590 ~ 10535137 (+)
AMCG00000352 NA other downstream 2188567 11965555 ~ 11995026 (+)
G149859 NA other downstream 2902682 12679670 ~ 12727903 (+)
AMCG00000381 NA other downstream 3189889 12966877 ~ 13030853 (+)

Expression


Co-expression Network