G150811


Basic Information

Item Value
gene id G150811
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 17545454 ~ 17548508 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU189793
CTTCTTCAACTTGGCCATCATCTCCACCGTCTTTGTCCTTGTCCTCCTCCTCGTCTTCGTCGTActcgtcctcctcttcctcgtcctcCTCAGAGGACGTGTCTCCTGCGCCATCCACCTGGAGCATCATgggaggctgctgctgctgctgctgctgctgctgctgctgctgttgctgctgctgctgctgcacctgcACCGCTCCCTGCCCTGCCTGTGCAGCCATGGCCGCTTGCAAGACCTGCAACGGCACCAGC
>TU189794
CAAAAATATTTAGGTAACTCAAAATAGGTCTTAGTACAACAAAATACTAAGTTCTCTAATTGTATTCAAAGCGTGGCCTTTAAACAGATCAGTGTAAATTACAAAGAGCGACCTTGATTTTCGAAAACAGTATAGAATGAATTATACAAACGTAATAAATAGATTTCCCTCttacacatacagtatgtaCAACAGCAGTTGAAACAGATGGTAGATTAACAGTAGAAAACaggttttatttgaatgaaagaAGCCGACATACACAATGTTCAAGACATCTCTTCCCTAGTTTGGATGAATGCGATACCTGAATgctgaaataaattgaaaggcacaaacaacaaaaaggtaCGACCTTGACAAActccatttttaattaaacctacACAAAGAAAGGACTTCCATGTTGTGGAGACgttcacattttaatacatgAGAAATTTCCAAGCTATTTTGCCTTTTGACTTCTTTCAACAGCAGTACATTTCAGACAAAGTACAGTATCTAGGCGCCGTTAACAAATGTACTAATTGTTGGATTGCTTTTTTCAGCATCGTCTGGGTCAATTGACAGGTGACTTGActccattttgaaatattgtgtATATCAGGCATTGACACAGTATGTTCAAGGACAATCTTCAGATCAATATCTTGTTAAACTTGAAAGGCTTTGACACAACCAAGATGTgtggagatttaaaaaataaaataaaaacatcattaCATACCCTTTAATGTTATCAAACGATGCAATACTGCTTAAACACGTAAGCCACtacagagagaaacaaattcAAGTTCAAATATTACGTTTCcaagtgaaatgaaaaggtGTACTGAAAACAGGGAGAACCCACGGTTAAAATTCAAGTTCGATACCGAGAGGACACTGAAGGGTTGAACGTGTGACGCACAGAAGAAACGTATCTTAAAAGGAACACTTGTATTGTAATAAGAGCACAGTTtggtgggtgttttttttttttttttttcttgttgttcacAAATTAACCAGCTCCAATTTCCCATTGTTCGAACTTTAcaggaataaattaaaaaataaactacattttactgcactgtataaAAACGTACAGCTGATAACACGACCATCATTCGACTAATAGGCGGCCCTGGCTCATTAGTGACGGCGTTTCGCGGACAGacaacaaattgaaaaaattaAACCCGTGCGGATTTACCACGCTCCCGCCGACTGGACATCGCAAACACAAAAGCCGAACTCAATACGGACAGTGCAAAGGACCTGGCTGCTAAAAGTACGGTACGGACCCTAGTAGACAAAGGTTAAAACGACAATCTAAAAATGTAAGCCAGTGGCGATTTTTCTGTGGCGGTTTTAAGATAATTAGGATGTCACAAACAATccatgtggaaaacaaacagatggaGACAAACATACCTTGCATCTGGCAACAACACTTCACAAGACAAGTCTTTGTCAATCGAATATCCAAGACCGGATATCTCACATGACCGTTTTTCGTTTCTAGTCCCAGTAGGTTTTGGAAGCTTAGTGTCAAATTTAACAGGTACCTACACCGAAAACCACGGTAACTAAACACAGGTTGTCTGCAATTTACCGAGGTTTCAACTCCGATACGGGATGAAAATAGGTTTATTGGCAAGAAAACATACTTCTAACTGGACTACCGATGTAAACGAACAGATTCCCTGAAATGTGACTTTAGTTCTGTGTATGCATCTGTTAAAAAGGGGATGGGGGGGCGGGGAGGAAAGTTCCAGACTCCAGTCGTTTTAAACCAGTCAACAGCAATATTAagttataaatatacaaactgaCATCACACTTAAGCTGTATAAAGAGGGAGGCTTGTTCGTATACCATAGTGTTGCTATTAACACTTCCAGTAGATcggttttctttgttgttgatgttggttTTTCTCCTACTCGTATTCCCCCGTTTATCAGCCAAAGTGCATATAGTCCACGTCTTGATGTGTCttgcattattttacaaaatagtCATTTTTACCACTCCGCGTCCCCGATGGCTTTAGAAAACACGTAATCTCTTCCGTTAAGGTTCATGATTCCATCTTTGAGGTGGAATTTCCATTTGTTCTTACTCCGGTggatCTTGTCGTACTGGCACACGACCACGTTCTCAGTGTCGAACAGCTCCTGTCCTTCCTCGTCGCTCACGTCATCCCCGCTGTTCAGAGGCTCTTCTTCAACTTGGCCATCATCTCCACCGTCTTTGTCCTTGTCCTCCTCCTCGTCTTCGTCGTActcgtcctcctcttcctcgtcctcCTCAGAGGACGTGTCTCCTGCGCCATCCACCTGGAGCATCATgggaggctgctgctgctgctgctgctgctgttgctgctgctgctgctgttgctgctgctgctgctgcacctgcACCGCTCCCTGCCCTGCCTGTGCAGCCATGGCCGCTTGCAAGACCTGCAACGGCACCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU189793 False 257 lncRNA 0.62 2 17548210 17548508
TU189794 True 2478 TUCP 0.41 4 17545454 17548508

Neighbor

gene id symbol gene type direction distance location
AMCG00000530 NA coding upstream 6045 17529717 ~ 17539409 (+)
AMCG00000506 LOC107680771 coding upstream 114957 17427522 ~ 17430497 (+)
AMCG00000507 NA coding upstream 145107 17377382 ~ 17400347 (+)
AMCG00000505 NA coding upstream 189631 17340772 ~ 17355823 (+)
AMCG00000509 nrxn3 coding upstream 291829 17211968 ~ 17253625 (+)
AMCG00000526 NA coding downstream 171141 17719649 ~ 17748022 (+)
AMCG00000527 psmc1b,psmc1 coding downstream 212195 17760703 ~ 17768088 (+)
AMCG00000520 LOC107670363,LOC107724957,LOC105896953 coding downstream 246840 17795348 ~ 17800754 (+)
AMCG00000542 ralgapa1,LOC107589631,LOC107693153,LOC107725466,LOC107586611 coding downstream 335321 17883829 ~ 17938428 (+)
AMCG00000543 NA coding downstream 410296 17958804 ~ 17962974 (+)
G150767 NA non-coding upstream 43601 17196477 ~ 17501853 (+)
G150689 NA non-coding upstream 822827 16681915 ~ 16722627 (+)
G150687 NA non-coding upstream 895880 16647905 ~ 16649574 (+)
G150686 NA non-coding upstream 898539 16645128 ~ 16646915 (+)
G150642 NA non-coding upstream 1354433 16190820 ~ 16191021 (+)
G150831 NA non-coding downstream 107068 17655576 ~ 17702341 (+)
G150877 NA non-coding downstream 320790 17869298 ~ 17870290 (+)
G150886 NA non-coding downstream 401426 17949934 ~ 17971252 (+)
G150909 NA non-coding downstream 425817 17974325 ~ 17974800 (+)
G150913 NA non-coding downstream 446051 17994559 ~ 18063346 (+)
G150750 NA other upstream 607172 16935993 ~ 16938282 (+)
AMCG00000514 NA other upstream 731089 16811453 ~ 16814365 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 2601054 14931778 ~ 14944400 (+)
AMCG00000412 pgf,LOC102799665,LOC102204058,LOC106593515,LOC106611025 other upstream 3391614 14133138 ~ 14153840 (+)
G150069 NA other upstream 3852865 13690839 ~ 13692589 (+)
AMCG00000525 NA other downstream 200002 17748510 ~ 17759582 (+)
G150976 NA other downstream 605356 18153864 ~ 18159321 (+)
AMCG00000550 NA other downstream 862935 18411443 ~ 18419576 (+)
AMCG00000573 NA other downstream 941343 18489851 ~ 18530757 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other downstream 985961 18534469 ~ 18565627 (+)

Expression


Co-expression Network