G150976


Basic Information

Item Value
gene id G150976
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 18153864 ~ 18159321 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU190029
TTCCAGGGGACAGATTTATTTGAGGTGTCAAGAGCCATCTTCAGAATGAACATTTGCAAGATCTTTCAAAGTACAAAAATCTATCACATTGAAGACTTTTCTAATATTTTAGTGCCACTAACATTTGGTTGGAGTGTAATTCCTTCAACTGATgtcaattttattttgattgagcAGTAGTTGGTGAGGGGGAGTGGGAGAGACAGGGGGACAAAGCATTTTCACTTCTGGTCAGGTATGAGGTCCTTGATGCACTGGCCCTTCTCCAGACGCTTCTCCATCTCAACCAGGAGCTTCACGCCATCCACCACCATCTGCACCAGCTCCACCTCGGAGAAGCCCAGGCGGTCTGCGTTGGAGATGTCGAACACTCCTCCCACGGCTGCAGTGTCCACACCACCTGGGGGCAACAAGACCATTACACCAGCCCTGCAGAGGGCATGTGACTGCACAAGTCCAACTGGACACAGGAGCCATGGCACAGGACCGTAGGAATATAGGAAGGAAAGGTCACCTGTACAGTAAGCAATGAGATCTAATGGCCAGAAAACTCACTTTTACAGGGTCCTTCAGACATGAGTGACTCTAGTGGATTGGGGACTTAAACAGTTACTGCATTAGGGGAGTTCAGTCTGCTCTTCCATGCCACACAAACCAGCCCACCTGTTCCACGTTTCTGCAGTCTCAGCCTCTTCAGCACCTCTCCGAATTCCTCATTCTTGCTCATGTTGGGCAGCTTGACGTGGACACCGGCACGGAGCCCAGTGCCCAGGTTGGAGGGGCAGGTCAGGACGTAGCCCAGGTGTTCATTCCACATGAATTCATGGCCTTTGTCCTTGAAGAGCGATTCAATCTGGGGAGGAGAAGCACCAAGATGAGTCAATCCAGGACCGGTCACATCTCCCCCATCAGGACTAGACACCGTCTAGACTAGAGGAAGTCAAAGCCTACAATTACAGCACAGGAATAGAAAATCAGCCTCTGCGAGACGTACCTTGGTCAGTCCAGTGCAGAAGCGCGTGAAGACATCCCGCATGTTGCCACCCTTCTGCATCGAGATGACTCGGAGGTGGTCTTCCTCATTGACCCAGACGAGGAAGGTCTTGTTGTCGTTGTGCCtgatggagagaggagaaggtgAAGTCTACACATGAGCTGCCTAGAAGAGCACAGTCAGTGTGGACAGCTGGATCTCTGGGATCACTGAAGGAGTGTTTCAGTATCCAAGGCAGCTAGAGTGACTCTTCACCCCAGTCCCTGCATCCCAACCCCCCCAAAAGAGTTAAACATTTTACTTGCAAGTTAAGTGTCCGATGTGTTCAAGAGCTGACCTTTTCAACACATACTTACATTCTTTTCATTCACAGGCTTGTCTATGCTAACTACTGTAGCCACAGATGGGCATTTGCATCGGGAGCAAACACTGCTGCTCGGCAATGATGGGATCGATAGGTTTCCTTTTAAGGCGCTCTCCCCCCCTCCATGGTACCGGGCGGGTCCGCCGCGCACCCTGACACTCACCAGATCCCCCTGGCGTCGGGCCAGTCCCGGGCCATGCCAGCGCAGGTCAGCAGGGGAGACACGGGCTTGTCAAACAAGAAGTGGTCCTCAATCAGCTGTTCTTGTTCCTGATCAGTCATTTTATTCAGAGGATAGTATTTCCCTTTAAGGTCACCATCCAGGGCACCCAAACTCAATCGCGAGGTTCTCCACAGCACGCCTCTCCCCACGGCTGCAGTGGGGGGGCAGGCACAGCCCACGGATGCTCCTGCCGGTCCGCACACGGGAGCTCAGCACGTAGTTTGGGTCCAGGTCATCCCCACcctgcggagagagagagacaccgaCCAAGAACGTCAGAGAACGACAGCCGCTCAACCCATGCCGCGGATTCACTGTCAGACACTAGCAGCGATCAGAGGGGACGGTGTGGAGGACGAGCACCTGCAGGTTCTCGGGGTTCAGGTCAGtcttgtgtttgtctgtgggTTTGTATCCTCCGTGTCTGGCTTCAATCACAGGGTCCAGCAGGTCCTTGAAGACATCATAGGTCTCCTCATCTCCGGCCACACAGCCCACCGTCATGATAAAGGGGTGTCCTGGGTTATCCACCCCGGTTTGAATGACATCATCCAGAGTAAATCCGCTAGGAGTTTGCTTGTCCCGCAGGCTCTCGTAGATCTCCGGAGTCAGCACCTTCGCCATGTAGTTGTTGTGCTTGCTGAGGTCGGGGTACTCCTGCTCCGCCGTGTAGTTCATCTTGAACGCGTTGTGCGTGTTCCCGAAAGGCATGGTTACCACTGATGCTGCACAGATTGGATTGGAAATGGGAGCCAGCAGAGCCGCTACTTCACTGAGCCGAGTCGACACTGCAACACCGTCTGCGCTGTGCGGAATGAAGCGGCTGGCGCTCTTTTATAGAGCAGCCGAGCTCGCCTCTGATTGGCTGCTATTTGGAGTCCATTCATTCTATTGGCCGAGGGCTGAGCGCCGCCACGCCTCCGCCCGTGATTGACAGCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU190029 True 2521 TUCP 0.53 5 18153864 18159321

Neighbor

gene id symbol gene type direction distance location
AMCG00000547 NA coding upstream 503 18125808 ~ 18153361 (+)
AMCG00000549 LOC106607643,LOC105020469 coding upstream 35598 18106891 ~ 18118266 (+)
AMCG00000546 eif5,LOC108435020 coding upstream 52992 18093989 ~ 18100872 (+)
AMCG00000536 NA coding upstream 133982 18011000 ~ 18019882 (+)
AMCG00000537 ppp2r3c,LOC106611177 coding upstream 149016 17998807 ~ 18004848 (+)
AMCG00000545 LOC104965446 coding downstream 2181 18161502 ~ 18176216 (+)
AMCG00000561 NA coding downstream 42161 18201482 ~ 18204980 (+)
AMCG00000563 klc1 coding downstream 63165 18222486 ~ 18240942 (+)
AMCG00000562 zfyve21,LOC106610961 coding downstream 85767 18245088 ~ 18251664 (+)
AMCG00000555 LOC104966444 coding downstream 149015 18308336 ~ 18336447 (+)
G150953 NA non-coding upstream 69177 18084460 ~ 18084687 (+)
G150951 NA non-coding upstream 72523 18078114 ~ 18081341 (+)
G150913 NA non-coding upstream 90518 17994559 ~ 18063346 (+)
G150909 NA non-coding upstream 179064 17974325 ~ 17974800 (+)
G150886 NA non-coding upstream 182612 17949934 ~ 17971252 (+)
G151050 NA non-coding downstream 199926 18359247 ~ 18360292 (+)
G151052 NA non-coding downstream 225279 18384600 ~ 18385046 (+)
G151217 NA non-coding downstream 699942 18859263 ~ 18859464 (+)
G151219 NA non-coding downstream 703703 18863024 ~ 18868044 (+)
G151226 NA non-coding downstream 760600 18919921 ~ 18921366 (+)
AMCG00000525 NA other upstream 394282 17748510 ~ 17759582 (+)
G150811 NA other upstream 605356 17545454 ~ 17548508 (+)
G150750 NA other upstream 1215582 16935993 ~ 16938282 (+)
AMCG00000514 NA other upstream 1339499 16811453 ~ 16814365 (+)
AMCG00000443 esrrb,LOC106611051,LOC101473368,LOC100708924 other upstream 3209464 14931778 ~ 14944400 (+)
AMCG00000550 NA other downstream 252122 18411443 ~ 18419576 (+)
AMCG00000573 NA other downstream 330530 18489851 ~ 18530757 (+)
AMCG00000572 mnat1,LOC107757134,LOC107675563 other downstream 375148 18534469 ~ 18565627 (+)
G151522 gpr135,LOC107564991 other downstream 1810018 19969339 ~ 19972015 (+)
G151676 NA other downstream 2682617 20841938 ~ 20843463 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G462730 NA unknown CI01000325 null 1617596 ~ 1620194 (+)