AMCG00000853 (LOC106586425,LOC108266238,LOC103360348,LOC102795313,LOC101468032)


Basic Information

Item Value
gene id AMCG00000853
gene name LOC106586425,LOC108266238,LOC103360348,LOC102795313,LOC101468032
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 5450060 ~ 5460804 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000853
atggcaacaaaaatgatttatttcacaGTGAATGGGAGACCCGAACAGGCCGAGTTTCGAGAGGACTGTCCTGCGCAGGATGTGAAAGattTATTCCGGGCCGCAGCAGAGGCCGGTCCTCACGACATCCTGAAGCTGTACAACTATAAAGGAAACATCATCAACATCTCCCCACACTTGGAGCCCAACTCCCCACAGAGCTGCTATAAGCTGGAAGTGGTGGCTGCGGATTGTAACAGTGAGCCGTTAGGTGCAGAGCTGGCAGCTAGTCTAGAAAAGAAGATCTTGATGGAGTCTGGGGAGACGCCATCCCTTgtgtatgaaatgaaaaaccAAGTCGAGTCTTTCCGGGAGAAACTTGAGAGTGTTGAGCATCTGAGCTGGCTGGGGCTTTTCAAGGAGCTTTCAGAGACAACACACAAGCCGTCGCCCTTTTATCACAAGAGATCGCTTCGCAAAACCAGGGAGGAGTGCGAGCGCGTCAAGGAAAAGTTCCTACAAATGAGGCAAGACTCACTGGAGGTCACAGAGGAGGTGCGACAGTATCTCAAGACGCCCACTTTTGATAACTGGCAGTGGGAAGACGCCGAAATCATGGTGCTGCTGCAGGTGATGTACACGGACCTGGACTTCATTGCCAAGTTCAATATCGAGCTGGAAGTGTTGCAGCAGTTCCTGTACGAGGTGTACCGACGCTACAACAACATCCCCTTCCACAACTTCAAACACTGCTTCTGTGTCACTCAGATGATGTACGGTTTAATATGGCTGACTGATCTCCGAAGCAAATTTGATAACATCGATCTCTTAACAATGATGACTTCGGCGGTCTGTCATGACCTGGACCATACAGGGTACAACAATGCCTATCAGATCAATGCTCGCACAGAACTGGCACTGAGGTATAACGACATTTCCCCCTTAGAGAACCATCACTGCGCAGTGGCCTTTGAAATCCTCGAAAAGAcggaaaacaatatttttcgAAATCTCACTACAGAACAGTACAAAAGGATCAGAGAAGGAATGATCAAgTGCATTCTTGCTACAGACATGGCGAGACACAACGAGATCCTGAACAAGTTCAAATCTATCTTGCCGGTGTTTGACTTCAGTAACAAGGATCACAAAGATGTTTTGATGATGATCATGATCAAGGTCAGCGATATCTCCAATGAAGCCCGGCCCATGGACGTCGCCGAGCCCTGGCTAGACTGTCTGCTTCAGGAGTTTTTTAACCAGAGTGATATGGAAAAACTGGAAGGTCTCCCCGTGTCTCCATTTATGGACAGAGACAAAGTGACCAAGCCGTCCTCACAGACTGGCTTCATCCGCTTCGTCTTGTTCCCTCTGTTCATAGAGCTGGCGAACCTCTTTCCCTGCCTGGAGCAACACATCATTGACCCCGTGCGGAAGGCTCTGGATTACTACACCGAGATGGAGAAAGCCCTGGAGAAGGAAAAGCTGAACCGAACCCAGGTCGAAAAGGCTGCCAAGACCAAGGAAACGGACTCGGACAGACAGAATGAGTCAGCTGCCCATTCGGAACCAGAGAAGTCGGCCAATGGGAGCCTCCCCAAACCCATGGGTCTGTCTAAACTCAAATCCTCAGTAGTACCCTCACTGAAGCAAGCCAAGAAATGA

Function

NR:

description
PREDICTED: high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A-like isoform X1

GO: NA

KEGG:

id description
K13761 PDE9; high affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000853 True 1644 mRNA 0.49 14 5450060 5460804

Neighbor

gene id symbol gene type direction distance location
AMCG00000851 tsn,LOC107555354,LOC107686515,LOC107555051,LOC107658218 coding downstream 3808 5440030 ~ 5446252 (-)
AMCG00000850 eaf2,LOC106586422 coding downstream 53674 5392602 ~ 5396386 (-)
AMCG00000852 NA coding downstream 58231 5381140 ~ 5391829 (-)
AMCG00000854 NA coding downstream 79905 5354386 ~ 5370155 (-)
AMCG00000846 dirc2 coding downstream 133964 5279544 ~ 5316096 (-)
AMCG00000858 NA coding upstream 139145 5599949 ~ 5639241 (-)
AMCG00000860 inhbb,LOC106575190,LOC108411664,LOC106574263,LOC105019970,LOC108270543 coding upstream 321548 5782352 ~ 5789779 (-)
AMCG00000861 ralba,ralb,LOC107746258,LOC107597482 coding upstream 338577 5799381 ~ 5811882 (-)
AMCG00000864 NA coding upstream 361734 5822538 ~ 5856287 (-)
AMCG00000863 NA coding upstream 400041 5860845 ~ 5892754 (-)
G126631 NA non-coding downstream 77601 5372249 ~ 5372459 (-)
G126563 NA non-coding downstream 331024 5116054 ~ 5119036 (-)
G126554 NA non-coding downstream 415363 5013868 ~ 5034697 (-)
G126476 NA non-coding downstream 672276 4773581 ~ 4777784 (-)
G126445 NA non-coding downstream 741209 4703139 ~ 4708851 (-)
G126665 NA non-coding upstream 1763 5462567 ~ 5464052 (-)
G126698 NA non-coding upstream 109140 5569944 ~ 5572133 (-)
G126767 NA non-coding upstream 482582 5943386 ~ 5949894 (-)
G126873 NA non-coding upstream 873909 6334713 ~ 6335866 (-)
G126887 NA non-coding upstream 920159 6380963 ~ 6381248 (-)
AMCG00000838 cacnb4,LOC108434427 other downstream 467409 4957138 ~ 4982651 (-)
G126427 NA other downstream 813544 4636096 ~ 4636516 (-)
AMCG00000804 NA other downstream 1793499 3553047 ~ 3656561 (-)
G126096 NA other downstream 2300808 3131714 ~ 3149252 (-)
G126700 NA other upstream 111901 5572705 ~ 5573027 (-)
AMCG00000888 LOC102209482 other upstream 1228764 6689568 ~ 6733817 (-)
G127039 LOC100136012,LOC107575789 other upstream 2169111 7629915 ~ 7645722 (-)
G127292 NA other upstream 3958192 9418996 ~ 9419325 (-)
G127443 NA other upstream 4813883 10274687 ~ 10278211 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038038 si:dkey-219c10.4 coding NC_007120.7 CM002893.2 38140911 ~ 38156894 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_05402729_05410456 NA coding CI01000009 null 5402504 ~ 5410456 (-)