AMCG00001003 (gad1)


Basic Information

Item Value
gene id AMCG00001003
gene name gad1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 12040325 ~ 12062111 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00001003
TCGGGATTCATAAACGAGGTATAAAGCCCCAAAGGCAATCAAacacctgcaaaaaaaaaagaagtcacGTTATCACCGAAAAGCGACCCAAGCTCTCTGATTTTTTTTGCAGACAAAGCGGATCTGTTGGATATTGGAAGAGCCCcattcaaaccagaggaggtgTTGGTGTGAGTCATGCGTGCGTAGTAGCGGATAAATAGGCGATTCACGCTTTAAAACCCGCAAATCATACGTACTTCAACAAAAAAAGGTCATGGTGGATGGATTTTTTGCAGTCTATTGATATTCAGACGTCGTTTTCCTTGGAGTGTTATAAACGCCCTGCACGTTGTATGGCTATAAGGCGCTAATTTGCTTGTTTAGGGAGAGTTTCTTGGACTCTGCTACCTGTGCACCTGCCTGATCCACACAACGTGACCTGCAACTTTTCATCCTGGTAAAATAAGCGGGGTTTTGCAGAAAGTGACAGCCCACCCTGGAGCGGGGACTTTTGTATCTCAGGACTGATGGCATCGTCTGAAGCTTCCTCCTCTGGCGGCGGTCCGGATCCCAACTCGACTAATTTACGACCCCCATCCACAAccTATGACACATGGTGTGGAGTTGCTCATGGATGCACCAGAAAACTGGGAATGAAGATCTGTGGGTTCCTGCAGAGGAACAACAGTCTGGAGGACAAGAGCCGCATCGTGAGCTCCCTGAAGGAGCGCCAGTCGTCCAAGAACCTGCTGAGCTGCGAGAACAGCGACCGGGACTCCAGGTTCAGACGCACCGAGACGGACTTCTCCAATCTCTTCGCAAGAGATTTATTACCAGCCAAAAATGGTGAAGAACAGACCATGCAGTTCTTGTTGGAGGTGGTTGACATTCTCACGAACTATGTTAGGAAGACCTTCGACAGATCCACCAAAGTCCTGGACTTCCATCATCCCCACCAGCTGCTGGAGGGCATGGAGGGCTTCAACCTGGAGCTCTCCGACCAGCCCGAGTCCCTGGAGCAGATCCTGGTGGACTGCAGAGACACTCTCAAATATGGAGTCAGGACAGGGCATCCCAGGTTCTTCAATCAGCTTTCCAGTGGACTGGATATTATTGGGCTAGCTGGAGAATGGCTTACCTCAACTGCCAACACTAACATGTTTACCTATGAAATTGCCCCAGTGTTTGTGCTCATGGAGCAGCTGACCCTGAAGAAAATGAGGGAGATGATCGGCTGGCAGGGCGGAGAAGGCGACGGGATATTTTCCCCAGGAGGAGCCATTTCAAACATGTACAGTGTGATGGCAGCTCGCTATAAGTATTTCCCTGAAGTCAAAACCAAAGGCATGGCTGCAGTTCCCAAACTCATCCTTTTTACATCAGAACATAGCCATTATTCGATAAAGAAAGCCGGTGCTGCTCTGGGCTTTGGAACAGAAAACGTTATTTTGCTCAAATGCGATGAAAGAGGAAGAGGACACGTGCCACTGTTCGTCAACGCCACTGCGGGCTCCACGGTGTTCGGAGCCTTTGATCCCATCTACGAGATCGCAGACATCTGTGAAAAGTACAATTTGTGGCTACATGTTGATGCTGCCTGGGGAGGTGGACTGCTGATGTCCCGAAAGCACCGTCATAAATTAAATGGCATTGAGAGGTACAGAACTTTTTCACATGGTGTTCTCCAAGGCTGCAATCAGATGTGTGCTGGCTACCTCTTCCAGCCAGACAAACAGTACGACGTCACGTATGACACCGGCGACAAGGCGATTCAATGCGGGCGTCATGTGGATATCTTCAAATTCTGGCTCATGTGGAAAGCAAAGGGAACAGTAGGTTTCGAACAGCAGATTAACAAGTGCTTGGAGCTCTCGGAGTATCTCTACACAAAAATCAAGAACCGAGAAGGCTATGAAATGGTTTTCGACGGAGAGCCTCAgcacacaaatgtctgcttcTGGTACATTCCTCCAAGCCTGCGGAGCATGGGTAACTGTGAGGAGAGACGGGAAAGGTTACATAAGgtgGCTCCGAAAATTAAAGCAAGGATGATGGAGTCGGGGTCCACTATGGTTGGCTACCAGCCTCAGGGAGACAAAGTCAACTTCTTTAGGATGGTCATCTCCAACCCCGCAGCCACAAAGTCCGACATTGACTTCCTGATTGACGAGATCGAGAGACTGGGGCAGGACTTGTAAAAGGATGCCAACTCTGCAGAGGGGGTGTCCTAGCGGAGGCCTTTTTTAACCAGCTTGACATGGCCGACTCTAAAAGGACCTAGAGTGAGGTTTCATGTTCCTGTCGTATCTGAAGCAATTTCATAGGATTTGAAACTTGCCTGTAGGTCTTTTTAGGTATAGGTGAGCTGTAATCGTATTATCCAGACGTGTTCTGTCAGTATGTATTCCAGTTTGTTCCGTCTTTTAGCAGTGACTATTCCGTATTAGAGTTAACGGCTGTATTTAAGAATTCGTCCACGTTTCAAACTATCCATCCTGTACTTGACTCTTTGCGTAATCCTCAGCATGTGTGCTACACGGAGAGAGTGCTAAGGGGCCCTGACCTGTGAAGTGCGTTAGACAGTGCGTACTGTGAATAATCCCTAGAGGTGAGGCATAGATCACACATAGAAACCTCGTTAATCCAGCAGCATTTTTTCTCATTGactgtaatatattaattattggtgcttttgttataaatgtaattacacaacCAATCGCACCACCTTATATCCTAGTTGTTCTGTCCCCTTTTGGTGTAAAGTAGAGGGGGTTACTGTAATACAGTCATTGCAAGAGGTATACTATTGCTGTGTTTTTAGAGATATTGAATTTTGTGTAGATTGTGTATAATATTGTTAAATGCCTTTGTGAAACAAAAGGGATATATGTAATAGTTTTACAGTAAgagatgtttaaataaatctaagatatagatatatactgaaatatttgcttatttatattaAGAAATGACCAGTGTTAAAGAGTTGTCTAgtattttcttccatttgtaatgtatctttatttatattctataaCACTATATGATCAAAATacgttttaaataatgtttaaggTATTTTAGTGTATTTGTGAGCCAAAGAAAATGATATAACTC

Function

symbol description
gad1 Enables glutamate decarboxylase activity. Predicted to be involved in chemical synaptic transmission; glutamate decarboxylation to succinate; and protein-pyridoxal-5-phosphate linkage. Predicted to act upstream of or within locomotory exploration behavior and social behavior. Predicted to be located in several cellular components, including axon; neuron projection terminus; and synapse. Implicated in anxiety disorder; bipolar disorder; developmental and epileptic encephalopathy 89; schizophrenia; and spastic quadriplegia.

NR:

description
PREDICTED: glutamate decarboxylase 1

GO:

id name namespace
GO:0019752 carboxylic acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016831 carboxy-lyase activity molecular_function

KEGG:

id description
K01580 E4.1.1.15, gadB, gadA, GAD; glutamate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00001003 True 3105 mRNA 0.45 16 12040325 12062111

Neighbor

gene id symbol gene type direction distance location
AMCG00001008 NA coding upstream 5709 12019805 ~ 12034616 (+)
AMCG00001009 sp5 coding upstream 23103 12014714 ~ 12017222 (+)
AMCG00001007 myo3b coding upstream 77628 11951375 ~ 11962697 (+)
AMCG00001005 myo3b coding upstream 107226 11925325 ~ 11933099 (+)
AMCG00001006 NA coding upstream 131013 11882644 ~ 11909312 (+)
AMCG00001013 NA coding downstream 10392 12072503 ~ 12078897 (+)
AMCG00001010 gorasp2,LOC103354349,LOC106928304,LOC103129211,LOC105930246,LOC102238218 coding downstream 17887 12079998 ~ 12092059 (+)
AMCG00001012 NA coding downstream 79619 12141730 ~ 12149295 (+)
AMCG00001011 NA coding downstream 87751 12149862 ~ 12157026 (+)
AMCG00001018 dync1i2,LOC103355058,LOC106586225 coding downstream 109278 12171389 ~ 12191575 (+)
G127774 atp5b,LOC107682211,LOC103355037,LOC102782720,LOC100705231,LOC102302090 non-coding upstream 297575 11671768 ~ 11742750 (+)
G127509 NA non-coding upstream 1595388 10442993 ~ 10444937 (+)
G127278 NA non-coding upstream 2662736 9363107 ~ 9377589 (+)
G127206 NA non-coding upstream 2957444 9081327 ~ 9082881 (+)
G127144 NA non-coding upstream 3400502 8638596 ~ 8639823 (+)
G127924 NA non-coding downstream 32030 12094141 ~ 12096863 (+)
G128074 LOC103479331,LOC106632289,LOC101486364 non-coding downstream 477970 12540081 ~ 12540318 (+)
G128101 NA non-coding downstream 543928 12606039 ~ 12655172 (+)
G128107 ola1,LOC107660044 non-coding downstream 576874 12638985 ~ 12676174 (+)
G128171 atp5g3,atp5g2,LOC101062993,LOC105908030 non-coding downstream 775540 12837651 ~ 12841008 (+)
AMCG00001002 myo3b other upstream 28900 11999664 ~ 12011425 (+)
AMCG00000949 NA other upstream 1886138 10100283 ~ 10154187 (+)
G127134 NA other upstream 3420130 8617199 ~ 8620195 (+)
AMCG00000848 NA other upstream 6574344 5461301 ~ 5465981 (+)
AMCG00000734 NA other upstream 10226168 1805407 ~ 1814157 (+)
AMCG00001022 NA other downstream 226839 12288950 ~ 12385042 (+)
AMCG00001098 NA other downstream 3088164 15150275 ~ 15184392 (+)
G128823 NA other downstream 3347001 15409112 ~ 15420880 (+)
AMCG00001114 NA other downstream 3398421 15460532 ~ 15463853 (+)
G129365 zgc:162707,LOC107749877,LOC107592986,LOC107668408,LOC107596553 other downstream 5960949 18023060 ~ 18044251 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000024_07308822_07327683 GAD1B, GAD1, GAD1A coding CI01000024 null 7306385 ~ 7327683 (-)