G125578


Basic Information

Item Value
gene id G125578
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030137.1
NCBI id CM030137.1
chromosome length 27060302
location 375820 ~ 376770 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU157403
atttggtgttcagtgtgtggtgttgagcctgtgtgtgttgttgccaGGGGATCATGCACGACTCCAAGCCTGTCTTCACTGCACAGTTCCACCCCGAGGCTAAAGGCGGCCCGACTGACACTGAGTTCCTGTTTGATGCCTTCATATCCCTCATTAGGAATGGTAAGGAGGTCAGCATCGTGTCTGTGATGCCCAGGAAAGAGCAGCCAACCAGACGAGCCCAGGTATAACCGCACTGTTCTGCACAACTACTGTGTGTGTTCCTGtcttacagtgtgtgtgttactattataacatacagacgggtgacaaatg

Function

GO:

id name namespace
GO:1901607 alpha-amino acid biosynthetic process biological_process
GO:0008652 cellular amino acid biosynthetic process biological_process

KEGG:

id description
ko00910 Nitrogen metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU157403 True 315 lncRNA 0.50 2 375820 376770

Neighbor

gene id symbol gene type direction distance location
AMCG00000691 NA coding downstream 9704 354488 ~ 366116 (-)
AMCG00000693 NA coding downstream 27410 339733 ~ 348410 (-)
AMCG00000692 acadl coding downstream 37559 332223 ~ 338261 (-)
AMCG00000690 NA coding downstream 46771 307481 ~ 329049 (-)
AMCG00000688 unc80 coding downstream 183492 145779 ~ 192328 (-)
AMCG00000696 erbb4,LOC107741926,LOC107555909,LOC107660610,LOC107662043,LOC107721020 coding upstream 154271 531041 ~ 536858 (-)
AMCG00000697 NA coding upstream 165286 542056 ~ 544156 (-)
AMCG00000700 LOC108441681,LOC108440448 coding upstream 214075 590845 ~ 612323 (-)
AMCG00000698 erbb4 coding upstream 266843 643613 ~ 647413 (-)
AMCG00000699 NA coding upstream 302244 679014 ~ 680483 (-)
G125515 NA non-coding downstream 248157 121280 ~ 127663 (-)
G125498 NA non-coding downstream 283165 92283 ~ 92655 (-)
G125497 NA non-coding downstream 284535 91051 ~ 91285 (-)
G125591 NA non-coding upstream 32845 409615 ~ 410817 (-)
G125622 NA non-coding upstream 146751 523521 ~ 527501 (-)
G125625 NA non-coding upstream 221214 597984 ~ 598335 (-)
G125642 NA non-coding upstream 510384 887154 ~ 887476 (-)
G125685 NA non-coding upstream 892461 1269231 ~ 1307353 (-)
AMCG00000687 map2 other downstream 131643 194644 ~ 244177 (-)
AMCG00000710 myo1b other upstream 931051 1307821 ~ 1312408 (-)
G125814 NA other upstream 1010073 1386843 ~ 1422410 (-)
AMCG00000719 NA other upstream 1101970 1478740 ~ 1500661 (-)
AMCG00000731 NA other upstream 1385259 1762029 ~ 1771025 (-)
AMCG00000741 gtf3c3,LOC104966512 other upstream 1452774 1829544 ~ 1831310 (-)

Expression


Co-expression Network