AMCG00002003


Basic Information

Item Value
gene id AMCG00002003
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 133459 ~ 152192 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002003
AACTGAGAGAGAGTTGCACAATGGACCTCAGCTTTCCGAAGAGCAACGTTGCATTCGCCCCTTTGCATTCGTTTCCACAGGACTTCTCCTACGATGATTCCAAAGTTGAGTTCGACGTGGATGCCCCCAATGGCGTTGTGATGGAGGGGTATCTCTTCAAGAGGGCCAGCAACGCCTTCAAGACCTGGAACAGgagGTGGTTCTCAATACAAAACAGTCAACTAGTGTATCAAAAGAAGCTGAAGGCAACAGTGTGGCCGGCGATCGATACAGTATTGATGAACCATGAACTTCTGGTGTTCTCGGACACCCTGACCGTGGTGGTTGAAGACCTCAGACTGTGTTCGGTTAAACCCTGTGAAGACATTGAGAGGAGGTTCTGCTTTGAGGTCGTCTCGCCTACAAAGAGCTGCATGCTTCAGGCCGAATCAGAGAAGCTGCGTCAGGCATGGATCCAGGCTGTGCAGGCGAGCATCGCCTCGGCCTACAGAGAGAGTCCAGACAACTATTATATTGAGAGGTTGGATCGGACCGCCTCGCCGTCCACCAGCAGCATTGACTCGGCCAGCGATTCCCGGGACCGCAGCGTGAAGGGCGAGAGCATCCTGCACCGCATCCAGACCATCCCCGGCAACGAGCTGTGCTGTGACTGTGGCCAGGCCGACCCGCGCTGGGCCAGCATCAACCTGGGCATCCTGCTCTGCATCGAGTGCTCCGGCATCCACAGGAGTTTGGGGGTTCACTGCTCCAAGGTCCGCTCTCTGACTCTGGACTCTTGGGAACCGGAGTTACTGAAGTTGATGTGTGAACTGGGCAACAGCACCGTCAACCAGATCTACGAAGGCGCGTGTGAGGAGCTCGGTCTGAAGAAGCCGGGACCCTCGAGCTCGAGGCAGGAGAAGGAGGCCTGGATAAAAGCCAAGTATGTGGAGAAGAAGTTCTTGAAGAAGATGGCGAGTGGAGAGGCGCTGGCGGATGGTGAGCGCAAGTCCCGGCGCTGGAGTGTGAAGAAGTGCCAGCGACACAACAGCTCCACCAAGGCCCCAAAGACCCGCCGGAAATACAGACAAGACCCTGGAAGCGCATCCCCTGCCAACCTCTCCTCAGCCGCCGCGGCGCTGGAGAGGAAGTTCCGCAGAGATTCACTCTTCTGTCCCGATGAACTCGACTCGCTCTTTTCTTACTTCGACACCGGCTCTGGGCCGCGCAGTCTGAGCAGTGACAGCGGGCTGGGCGGCAGCACGGACGGCAGCACGGACATCCTGGTGTTCGGCTCCGTGGTGGACAGTGTCACCGAGGAGGAGTGCGAGGTGTCGGAGGAGTCCAGCGGAGAGGCCGAGATCGAGCCAGAGACCTCAGACCCCGAGGATCTCCGTGAGCTTCACCCAGGGGCGCTGCTGTACAAGTCCGCCCGGGCCCGGAACCTGCCCGTCATGGCCGAGGCGCTGGCACACGGAGCTGACGTCAACTGGGTCTGTGACGAAGAGGAGAGCAAGAGCCCACTGATCCAGGCCGTCATCGGGGGCTCCTTGATTGCCTGCGAGTTTCTGCTGCAGAACGGGGCGGATGTCAACCAAAGAGACATGCGAGGGAAGGGGCCGCTGCACCACGCCACCTATCTGGGGCACACGGGGCTGCGACTGGCTCGGATGAACGAGGAGATGCGCGAGTCGGAGGGTCCCTTCGGGCAGCCAGGTCAATATCCCACCAGCAGCCCCACTGAGCAGCAGTATAGGAAGTGTATTCAGGAGTTTATCTGCCTTAACATAGAAGAGTGCTAGACGCACTGACCCGGTTCAGTCGCTGGCGGGGGGAGGAGAAAGCGTGTGTCCTGGCAGGAGCCCTCGAGCAGCGACCTTGTCCAACAGGCACCAGCGCTAGAGAGGAGTCTGCTGATGACGATAGCGCTTTTTAAACTAGATTTTATGGGGGggttgcttttttctttttttttttacaggcgTTTTCTTTGTCGTATTCGACCCCTCACACTCTGTACAGTGGgatactgtgtttttaaaactggAATCTGTTTGTGGAGTGATAGTGGCAGCAACTGTGAGGCTTTGAGACGACAGGGGCATCTGGCCGAATCATCAGGAGCGTAAAAAGACTGCGCTGACAGGGCGGTCCGATTGGCTCGGACTGCGAGACCCTGTGCTTGGAGGCGCTGCTGGGAGATCGGAGACACGCGGTGAAGAGTCACTGCCGGGGTTTAACTGCGTTGTTATTGAGTCCCAGACTCTGCTGTGGGCGGCAGGGTGACATGTAGTCTCTCTTAAGCTGTAGATAGCATGTTTATGGGTGgctgatttaattattaataattaaatatttattatgtatcatccacatttttcatttattattaagctttaattattatgataattcATATTATAACTAACTGTATATAGGTAGAggtttaaatgtttcaattccATGTTTTCTACAGTACCATCAATAACCAAGGCAATGAATGAGCTATTGTTGCTCAACACAATATACAACTTttaacacaaacagagacaaaatCGAGACAAAATATTCTGTGTAGTGCGCATAAACTGTTGTCTACTTTCCATAGATATGAAATGCAATAGAAATGCACTGTTTCTTGTGCCGTTGTTGTTAAAAACGAACGGGCCGACACAAATCAAGTCTTGACACAGTGGCACAGTTCATAcgtaaaaaatataatgaatccagtttaataattaatatatcccaaaatacatgattaaattGAGTTACTGTCAAACTAATTCCACAACAAATCACCTTGTTGGATCTCTACTCCTTATAGGTACACACACATGTCCACCCTGAGTGAAATGGATGGCAGCATCCCACTCCGGATTCTGCTTACATTTGTCTGCCATATTTCCTTGCAGCAGGCAGTCACATGACAAGCAAACTCTGATTGGTTAAATAATGCCCTTCCCTAATTTTGCttctacaaaatcaaaactaatttgaaaatgttgccACAACCTCTCTCGTAAATGTAGAATTTGCGTCATTTCTATGACCACAAAACGCCCCTTCTGCATTTGTGTAGCAGCGCGAAGGCCGGTGTCCCTCAGCTTCAGCATCTCCTCAGTTGGTGCTGAAAGACTAAGATTACACCATTTTCAGGTCACCGTGTTTTATCTGTTTTAGCCAGGCCGTGTCTTCAGATGTGTCCAGCCTTGAGGACAGGGCAGGCAGCGGAGGACAGGGGACACTTGTTTAGGATTCGTGTCACTATTGTCCGTGACAATTTCAATTCCAGATCATATCCTGTCATCCAGCGCTAAGGCATCGCTGTCCGTTTCTTCTATCAATTGAGGTCGGGCTGAAATAAAGTATGATTTGTACTAGGAAAGCTTGGccaaagggaggaggaggatgtcAGACGTTCATTGGGAATCGTGCACAGTGCTGCCGCTGTGCATGTCCGGCTGTGATGGAACGTTTCTTATTGACCTGCAGCGCTGGGTATAGAGGGCCCACAGTGAGGGCATGGCGAAGGCTAGAGAActcatagaaataaataaagggaacAACAATTTTAAAGCCTGAACCTGAATGAAATATAGAGCTTTTTTATTCCTCATCTTCGCCTGATCTCTCTTCAGCTGCTTTCCAAGTACTCTTGACAAAACCACGGTATGTGTGTCGCCTCAAAGCCTAGACTGTGCAgttgctgtgttttattattcttaatcGGTTACTGTTGTGTCACCAACTAGAATTGTTTTGAAGTGACGGACGTCCTCGCTGTGCTGCTGAGTTGAGTCACTGTGGACTCGCCTGTTGTGTCACAGCAAACTGCACAGAGGTGCACCGAACagtatttactgaaaacatatttcaacTGAAAACACGTAATTCGTTACTAGTATGAAGATGATGCCGCGTTTCTTAGGTCACTTTCTGAAGCTCAAAGTTaaatcattcatatatatatatatatatatatatacggttGACTCTGCTCTGTTGAAATACTAGTATGgaaattgtgtgtttctgttgttaATGATTTTCTGCAAGGAATTCTGTTCGTGTGTCATTTAATTCAGCGATGGCTCAGAGTCGGTATGTGCTGTAATTCGCTGCTTCAGTGGTCAATCAGTATTTCTTTCAGATGTGAATTTCAGTTCAGACACTTGCAAATGGAATCTGCTCCAACTGGGATACAGATCTACTTGAAATGAGTCAATTTCTCTTGCTCGGAAAAAAGtttcatatataatatttgtatttgaaaatctGCATTTCTTCTGTCTGTGTAGTAGTGGCATGAGatacttttgtgtgtgtattttgcaaagcaaacaaaaaaaatgcttgtgAAAATAGTttggaaaaatgaaaaggag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002003 True 4367 mRNA 0.49 14 133459 152192

Neighbor

gene id symbol gene type direction distance location
AMCG00001999 ube2j2,LOC107697915,LOC107706988,LOC107599097,LOC107664234 coding downstream 18217 99046 ~ 115242 (-)
AMCG00001996 sdf4,LOC107716138,LOC107591077,LOC107673072,LOC107687443 coding downstream 109086 16637 ~ 24373 (-)
AMCG00002004 NA coding upstream 5838 158030 ~ 205675 (-)
AMCG00002006 NA coding upstream 138327 290519 ~ 291280 (-)
AMCG00002007 NA coding upstream 146198 298390 ~ 300824 (-)
AMCG00002008 NA coding upstream 167959 320151 ~ 321122 (-)
AMCG00002013 NA coding upstream 245925 398117 ~ 496763 (-)
G120320 NA non-coding upstream 268396 420588 ~ 420925 (-)
G120334 NA non-coding upstream 534752 686944 ~ 689958 (-)
G120399 NA non-coding upstream 833211 985403 ~ 987224 (-)
G120431 NA non-coding upstream 1073527 1225719 ~ 1228159 (-)
G120477 NA non-coding upstream 1315747 1467939 ~ 1528085 (-)
AMCG00002044 NA other upstream 1334359 1486551 ~ 1490567 (-)
AMCG00002078 NA other upstream 2693190 2845382 ~ 2847937 (-)
AMCG00002085 NA other upstream 2769060 2921252 ~ 2931018 (-)
G120748 NA other upstream 2843316 2995508 ~ 3004917 (-)
AMCG00002094 vamp3,LOC107582408 other upstream 2961250 3113442 ~ 3128440 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022553 acap3a coding NC_007134.7 CM002907.2 36888913 ~ 36934944 (-)
grasscarp (Ctenopharyngodon idella) CI01000001_01833609_01860272 CENB5, ACAP3 coding CI01000001 null 1833261 ~ 1860953 (+)
eurasian perch (Perca fluviatilis) G37769 NA non-coding NC_053115.1 CM020912.1 12603798 ~ 12606662 (+)
mexican tetra (Astyanax mexicanus) G37609 NA non-coding NC_035900.1 CM008303.1 18598257 ~ 18605649 (-)