AMCG00002311 (ttll10)


Basic Information

Item Value
gene id AMCG00002311
gene name ttll10
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 11365614 ~ 11379568 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002311
GTGAGCCTGTACTGTGAGAGGAAAGGGTGGCAGCGCCTTCATGACAAGCGTAGAGAGGACTACAGACTGAAGTGGTGCGAGACCAAATCCTGCGCCACATACAGCAGCTTCCGGGAAGCACTACACAGCtccagactgtgtgtgtgtctgggtcaCTCACAGGCTCCTGTGTCCTCCCCAGGGGAACAGCTGCTGTACCAGATCCCCAACAACAAAGTCCTGACCACCAAGATCGGGCTGCTGACCAGTCTGCGGGAGTACGAGAGGGTCACCAACAAGGTCAAACAGGGCAGGGGTCACAGGTGTCTGACAATGGAAGAGTTTTTCCCAGAGACTTTCCGCATGGActtgagagaggagagggaggcatTCTTTGCTCAGCTACAAGGCGGGGAGGACAGCCAGCAGGGACGGAAGACGGCCTACCGATCCCCCCAGGCCAGGATTGCTCAGAGGTATATTCAGAACCCCTTGCTCTTAGAAGGCAAGAAGTTCGACATCAGATCCTACTTCCTGATCGCCAGCACTACTCCTTACATGGTGTTCTTTCGCCATGGTTATGTCAGGGTGACCTGTGACCCCTACGACCCCAACTCGGCCGACCTCTCAGCTCACCTGACCAATCAGTACATGCAGAAGAAGCACCCCCTGTATAATGAGCTGAAGGAAGAGACCGTGTGGTCCATGGAGCGTTTCAACTGCTACGTTAATGAGACGTTTGCTGCTGCCAGGGCTCTCCCCCGGGACTGGGTCTGCACTGTTTTTGCGAAACGCATGCAGCAGATCATGACGCAGTGTTTCCTGGCAGTCAAGTCCAAACTGGAGTGCCGACTTGGCTACTTCGATCTGATTGGCTGCGACTTCATGATCGATGAAGACTTTAAGGCGAGTCTCTTCTCTTTCCTCTTCTATCCTCActtgaatctctctctctctctctctctctctctctctGTGTGGCTGCTGGAGATGAACTGCAACCCGGCGCTGCACACCAACTGCCAGGTGCTGAGGGAAGTGGTGCCTTGCGTGGTCACCGAGACCCTAGGTGAGACTCCTGCCCTGCACTGCATTTCTCAGTtc
>TU153482
AGAAAGTTGAGGATCCCAGAGGACCAGGGCCGTTCTACTACATCGGTGGTGGAAACGGAGCGTCCATAGTGAGCCTGTACTGTGAGAGGAAAGGGTGGCAGCGCCTTCATGACAAGCGTAGAGAGGACTACAGACTGAAGTGGTGCGAGACCAAATCCTGCGCCACATACAGCAGCTTCCGGGAAGGGGAACAGCTGCTGTACCAGATCCCCAACAACAAAGTCCTGACCACCAAGATCGGGCTGCTGACCAGTCTGCGGGAGTACGAGAGGGTCACCAACAAGGTCAAACAGGGCAGGGGTCACA
>TU153483
cCCAGTACATGCAGAAGAAGCACCCCCTGTATAATGAGCTGAAGGAAGAGACCGTGTGGTCCATGGAGCGTTTCAACTGCTACGTTAATGAGACGTTTGCTGCTGCCAGGGCTCTCCCCCGGGACTGGGTCTGCACTGTTTTTGCGAAACGCATGCAGCAGATCATGACGCAGTGTTTCCTGGCAGTCAAGTCCAAACTGGAGTGCCGACTTGGCTACTTCGATCTGATTGGCTGCGAC

Function

symbol description
ttll10 Predicted to act upstream of or within cellular protein modification process. Is expressed in central nervous system and polster. Orthologous to human TTLL10 (tubulin tyrosine ligase like 10).

GO: NA

KEGG:

id description
K23628 TTLL10; tubulin--tyrosine ligase like protein 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002311 True 1083 mRNA 0.55 8 11367566 11379568
TU153482 False 306 lncRNA 0.56 3 11365614 11367895
TU153483 False 239 TUCP 0.54 2 11376940 11377738

Neighbor

gene id symbol gene type direction distance location
AMCG00002307 LOC105898973,LOC106572187,LOC103032744 coding upstream 94285 11255732 ~ 11271329 (+)
AMCG00002309 NA coding upstream 120634 11214084 ~ 11244980 (+)
AMCG00002308 NA coding upstream 163613 11144009 ~ 11202001 (+)
AMCG00002306 NA coding upstream 224927 11127459 ~ 11140687 (+)
AMCG00002305 NA coding upstream 263610 11097491 ~ 11102004 (+)
AMCG00002314 NA coding downstream 13387 11392955 ~ 11406464 (+)
AMCG00002316 NA coding downstream 185441 11565009 ~ 11587894 (+)
AMCG00002323 NA coding downstream 222642 11602210 ~ 11612235 (+)
AMCG00002325 NA coding downstream 244213 11623781 ~ 11628341 (+)
AMCG00002324 zbtb17 coding downstream 257245 11636813 ~ 11644784 (+)
G122389 NA non-coding upstream 16976 11334931 ~ 11348638 (+)
G122328 her9,LOC107687478,LOC107716081,LOC107593950,LOC107703052,LOC107737700,LOC107591146 non-coding upstream 437671 10870773 ~ 10927943 (+)
G122236 NA non-coding upstream 1038963 10323529 ~ 10326651 (+)
G122198 NA non-coding upstream 1233414 10079747 ~ 10132200 (+)
G122126 ctnnbip1 non-coding upstream 1466734 9862956 ~ 9898880 (+)
G122417 NA non-coding downstream 78076 11457644 ~ 11470525 (+)
G122467 NA non-coding downstream 142606 11522174 ~ 11522631 (+)
G122468 NA non-coding downstream 143304 11522872 ~ 11523114 (+)
G122469 NA non-coding downstream 143659 11523227 ~ 11523622 (+)
G122470 NA non-coding downstream 145664 11525232 ~ 11528098 (+)
AMCG00002310 NA other upstream 5774 11357552 ~ 11359840 (+)
AMCG00002296 NA other upstream 611721 10714799 ~ 10753893 (+)
AMCG00002294 rere other upstream 760775 10567912 ~ 10604839 (+)
AMCG00002272 NA other upstream 1514302 9844205 ~ 9851312 (+)
AMCG00002245 NA other upstream 2573136 8738771 ~ 8792478 (+)
G122482 NA other downstream 249444 11629012 ~ 11630892 (+)
AMCG00002331 NA other downstream 309032 11688600 ~ 11694165 (+)
AMCG00002339 NA other downstream 330882 11710450 ~ 11715372 (+)
G122582 NA other downstream 455871 11835439 ~ 11836169 (+)
AMCG00002355 NA other downstream 514905 11894473 ~ 11898701 (+)

Expression


Co-expression Network