AMCG00002725


Basic Information

Item Value
gene id AMCG00002725
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 184121 ~ 189337 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002725
CAGGGGGGGGGGTTATGACTTGTGTCAGCTGTGTTTCCCCCGTTCTGATTTGTAAATAATCAGCAGCGCTGAGACTCGGGCCGCAGTGGGTGCTCAGTAAGCCTCTTGTCTTCCCACTGCAGGGGAATTAGCCTGTGATAGCGCAGATTAAGATCAGGGTCTTAGGCGCAAACAAACTGCTTTTCATTGTCTAATCGAGCAGCCCAGAGTCAACATCATGAGAGCTGTCTGCTGTGTCCTTCTCTGCTCCCTGCTCGCCCTGCAAGGCGAGGCTCTGCGCTGCTTCACCTGCGTCGGCTCCAACGACGAGGACTGCAACCGCCAGGGCTCCCAGCAGTGCCCCAGCTACTCGGACGCCTGTGCCATCATCAAGGGACAAGCCAGGGTCCGAGTGCACTGCTGCTTCTCTGACAACTGCAACAGCAAGGGCCGCGCCGCCAGCCACACTTACAGCGCCAGCTACCTACTCGTCCTGGCGCCGCTGCTGCTGCGCCTGCTGCGCCCCCCTACCCCCCCGCCCTCCTCCTACTCCGTCCACAGCCTCCCCTCCCCCGGCCTGGGCACAGTCGCCATGCTCTGTGTGGATCGGGGAGGAAACAGGTCACTGAACACGGAGCCAATCCGGCAGATCAGCAAAATCAACAGTGAAGTTCTGAGAACTGGTTACGATTCGACGATTGCATTGCAGCTGTGCCAGAGCCCTctccttctctcgctctcttctTTTATCCCCCCCATCCTGATTCTCCCTCACACTCCATGGATCTCAAGACAGCCGCCAGCAGGCTCTGAACCCCCCGGTCCCTCCTTCAACATGACCTTCACCCACAGCTGCCTCCGCTGCGTCCTCTCCAGCCTGCTCTCAGCTCcggtgtcagtcagtcagactcTGTGTGCAGCAGTCAGTCAGGTCCTGGCACTGTCCCGCTATCGGCATCGCCACTCCTCCGCTGCCCTCAGCCCCGCCCATGCAGCAGCCCAGAGCCCCACAGGGCCCCCTGCAGACCCCCAGAGCCCCCCGGAGCCGGTGTAA
>TU173921
GCCGCAGTGGGTGCTCAGTAAGCCTCTTGTCTTCCCACTGCAGGGGAATTAGCCTGTGATAGCGCAGATTAAGATCAGGGTCTTAGGCGCAAACAAACTGCTTTTCATTGTCTAATCGAGCAGCCCAGAGTCAACATCATGAGAGCTGTCTGCTGTGTCCTTCTCTGCTCCCTGCTCGCCCTGCAAGGCGAGGCTCTGCGCTGCTTCACCTGCGTCGGCTCCAACGACGAGGACTGCAACCGCCAGGGCTCCCAGCAGTGCCCCAGCTACTCGGACGCCTGTGCCATCATCAAGGGACAAGCCAATGGCGTGATGAAGTCCTGCTCGTACCGCTCCTTCTGTGAGCAGGCGCGGCGTGAGGGCTCCAAGGCGCCAGGGGTCCGAGTGCACTGCTGCTTCTCTGACAACTGCAACAGCAAGGGCCGCGCCGCCAGCCACACTTACAGCGCCAGCTACCTACTCGTCCTGGCGCCGCTGCTGCTGCGCCTGCTGTTCTTCTAGCCGTCAGGCGCCCCCCTACCCCCCCGCCCTCCTCCTACTCCGTCCACAGCCTCCCCTCCCCCGGCCTGGGCACAGTCGCCATGCTCTGTGTGGATCGGGGAGGAAACAGGTCACTGAACACGGAGCCAATCCGGCAGATCAGCAAAATCAACAGTGAAGTTCTGAGAACTGGTTACGATTCGACGATTGCATTGCAGCTGTGCCAGAGCCCTGTGAGACCCTGGcaagtctctctctttctctctctctcagctccttctctcgctctcttctTTTATCCCCCCCATCCTGATTCTCCCTCACACTCCATGGATCTCAAGACAGCCGCCAGCAGGCTCTGAACCCCCCGGTCCCTCCTTCAACATGACCTTCACCCACAGCTGCCTCCGCTGCGTCCTCTCCAGCCTGCTCTCAGCTCcggtgtcagtcagtcagactcTGTGTGCAGCAGTCAGTCAGGTCCTGGCACTGTCCCGCTATCGGCATCGCCACTCCTCCGCTGCCCTCAGCCCCGCCCATGCGTGCTTTGGGATGTTCTTCAGGATTAAAAGCCTTGTATCAATGCAAgcttgtataattatttttactttattgtctCCAATCACATGCCTGCACAATGTGTGCCGGTCACTCTGAGTGTGAGACCCCAGGGTCACTGCTGTCTGCTCCCAAAACAAACAGGCCACCTAGCTGAGCTTCCCAGAGCAGCCCAGAGCCCCACAGGGCCCCCTGCAGACCCCCAGAGCCCCCCGGAGCCGGTGTAAACAGGCCGACTCTCTCGGCGCGCTGCCGATTCAGGGCCCCTGCCAGAGCTGTCTGCTGCACACAGGCTGACGAGACACGTTTCACATCAACAGCTGGGATTTCACACATCCACTCACGTTACTCAGATTAAAGAggatgtttataaatatatggaactctttctttgtttgtctagttctatgtaaatataaataataaacttagtGCATTTTTTCTGTA

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0006814 sodium ion transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002725 False 1033 mRNA 0.61 6 184341 189337
TU173921 True 1485 TUCP 0.57 3 184121 189258

Neighbor

gene id symbol gene type direction distance location
AMCG00002724 NA coding downstream 1598 172793 ~ 182523 (-)
AMCG00002728 NA coding upstream 1003 190340 ~ 228169 (-)
AMCG00002727 NA coding upstream 65612 254949 ~ 261173 (-)
AMCG00002731 NA coding upstream 91477 280814 ~ 292475 (-)
AMCG00002734 NA coding upstream 294565 483902 ~ 484300 (-)
AMCG00002732 wdr11,LOC107664693,LOC107741118,LOC107750394 coding upstream 296499 485836 ~ 513387 (-)
G138282 NA non-coding upstream 37683 227020 ~ 230780 (-)
G138303 NA non-coding upstream 112745 302082 ~ 387075 (-)
G138304 NA non-coding upstream 146400 335737 ~ 342518 (-)
G138310 LOC106579428 non-coding upstream 176870 366207 ~ 371624 (-)
G138324 NA non-coding upstream 293887 483224 ~ 483603 (-)
G138245 NA other downstream 37281 144926 ~ 146840 (-)
AMCG00002743 psap other upstream 616423 805760 ~ 821591 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 731451 920788 ~ 925398 (-)
G138741 NA other upstream 2528871 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3739424 3928761 ~ 3953324 (-)
G138932 NA other upstream 3812313 4001650 ~ 4002804 (-)

Expression


Co-expression Network