AMCG00002743 (psap)


Basic Information

Item Value
gene id AMCG00002743
gene name psap
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 805760 ~ 821591 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002743
ATGCTGCAGCACCGCAACCTTGTCCTGCCTGGAGTTACACAAGAAGTGCGCTGTGCTCACCTGTGTCACGctcaaTTTCTAACCTACCCTCGCCACTCGCAGAGAGGAAATGAGAAACCCCCTTGTTTCTCTAGGTGCTGTCAGTGTCTTCCGATTTCAGTCTTTATCCATGCTgacctctctcctctcccccgcCCAGCTGCAGCCACCCCTCTCCTGGGGCAGGAGCAGTGTGTGAAGGGCCCCCCGTACTGGTGCCAGAATGTGAAGACGGCCTCCGCCTGTGGAGCAGTGTCCCACTGCCAGCAGAACGTGTGGAACAAACCCACCGCGAAATCCGTGCCCTGTGATCTGTGCAAGGAGGTCCTGACCGTGGTGGGCAACCTGCTGAAGGACAATGCAACTCAGGTGGGTGTAGCCTGTGACTGTCTCCCTGTCTGCACGCACACACCAGTGCCACTGCACCGTTATGAGCCCACACTAGGACTGTCTTGTCTCCTTGGGGACTGCGTAACCCAGCACCCAGAGCAGTGTCAAAATATCCTCATCTTCCCTTTTCTGAAATGTCGCCATACTGCCGAGATCCTGGACTACCTGGAGAAAGCCTGTCAGCTGATCCCGGACTCCGGCCTGTCCTCAGAGTGCAAGGAAATGGTGGACAACTACTACCCCATCCTCATCGGCATCATCACGGGGGAGCTGGGTATGGCGCCGTCCCCCGGGCCCCTCCGCACACGGCTGCGATGGGCCGATCACGCCACTTACTGCTCCCTAAAGACTGCACCGCCAGGCCAGTGCAGGCAGTACGTGTCGCAGTATGCGCCCCTGGTCTTCCAGCAGCTCATGTCCATGAAGCCAGAAGACATCTGCTCCCGGGCCGGGTTCTGCGGGGGCAGCAAATCCCTTCCCATGGAGACCCTGGTGGCCGCCAAACTCTTCCCAGCGATCAAAGTCATGCCGGCCGTCGAGTTGAAGCCCGCCAAGCCTTCTCACCGCGGCGTCTCGTCTCTCCCACAGAAGCTGGTTCGAGTGCAGAACTCCCCCCAGTGCGCCGTGTGCGAGTTCATCATGAAGGAGATCGAGAACATCCTGCAGGGGGAGAAATCCGAGAAGGAGGTGGTGCAGGCGGTGGAGAAGGTGTGCTCGGTGCTGCCGGCCTCCCTGGCGGCGCAGTGCCGGGACCTGATCGACGTGTACGGCCAGGCGGTGATCGAGCTGCTGGTGCAGGAGGCCGACCCCAAGACCGTGTGCACCCTGCTGGGGCTGTGCAAGGACGCCAGCCGCCTCTACATCCCCGAGATGGACCGGGCCCAATTCCAGGCCGGCGGGTTCTGTGAGGTGTGCAAGCTGGCGGTGCAGTACATCGACGGCATGCTGGAGCAGAACGCCACGGAGGCGGAGATCGAGGACGCGGTGCGGAAGGTGTGCAGCTTCCTGCCCGAGGGCGTGCGCGAGCAGCGGCTGCTGGGAGGAGAGCAGTGCAGCTGGGGCCCGGCCTACTGGTGCAAGAACATGGACACCGCGGCCCGCTGCAGTGTGAGTCACCCGTCCCCCGCCTCTGTCCCCGCGCCTCTGTCTGAACCCCCCgagagtgtctgtgtctctgaccGCTGTCCCTTCTCCCCCCAGGCCGTGGAGCACTGCAGACGCCACGTGTGGAACTAA
>TU174097
GCGGGGCCACTGCATTGCAGCAGCggagcaggagcagcagcagcgacCCAAGCGAGAGCAGCGACCCAGCGATTCAACACAACCAGCACCGACACCAAACCCACCACCACCCAGCGGCCGTGATGTGGCTCACCCTCCTCTTCATCTCCACAGCTGCAGCCACCCCTCTCCTGGGGCAGGAGCAGTGTGTGAAGGGCCCCCCGTACTGGTGCCAGAATGTGAAGACGGCCTCCGCCTGTGGAGCAGTGTCCCACTGCCAGCAGAACGTGTGGAACAAACCCACCGCGAAATCCGTGCCCTGTGATCTGTGCAAGGAGGTCCTGACCGTGGTGGGCAACCTGCTGAAGGACAATGCAACTCAGGCCGAGATCCTGGACTACCTGGAGAAAGCCTGTCAGCTGATCCCGGACTCCGGCCTGTCCTCAGAGTGCAAGGAAATGGTGGACAACTACTACCCCATCCTCATCGGCATCATCACGGGGGAGCTGGTGAGTGGGGCGTGTGTGTGGTGCAGTCTCTGTTCTCAGGGGAT
>TU174098
CCCtgttgggttttgttccaactgagctctcaatgacttgaattgaactaatttcctaaatcagagccttattgttaacagtaggggttttcaGTTAAGTATACCGTTGTGTAAGGGATTTCTTATTAAGGAACTAACTATGTCACAATTTTAGTCTAATGTCATCAGATTacttcagttaagtaattgagagctcagggcaggggctcctccaggaccaggcaAAGAGATGACTTGTGCCGACTGCCCTCGGTGTCCTGGGACAGGGAGATACCATTACTgggggggtgtctgtgtgtggccCTGCTGTGGGCTGACTCCTGTGTCTCTGTTACAGTGCAGGCAGTACGTGTCGCAGTATGCGCCCCTGGTCTTCCAGCAGCTCATGTCCATGAAGCCAGAAGACATCTGCTCCCGGGCCGGGTTCTGCGGGGGCAGCAAATCCCTTCCCATGGAGACCCTGGTGGCCGCCAAACTCTTCCCAGCGATCAAAGTCATGCCGGCCGTCGAGTTGAAGCCCGCCAAGAAGCTGGTTCGAGTGCAGAACTCCCCCCAGTGCGCCGTGTGCGAGTTCATCATGAAGGAGATCGAGAACATCCTGCAGGGGGAGAAATCCGAGAAGGAGGTGGTGCAGGCGGTGGAGAAGGTGTGCTCGGTGCTGCCGGCCTCCCTGGCGGCGCAGTGCCGGGACCTGATCGACGTGTACGGCCAGGCGGTGATCGAGCTGCTGGTGCAGGAGGCCGACCCCAAGACCGTGTGCACCCTGCTGGGGCTGTGCAAGGACGCCAGCCGCCTCTACATCCCCGAGATGGACCGGGCCCAATTCCAGGCCGGCGGGTTCTGTGAGGTGTGCAAGCTGGCGGTGCAGTACATCGACGGCATGCTGGAGCAGAACGCCACGGAGGCGGAGATCGAGGACGCGGTGCGGAAGGTGTGCAGCTTCCTGCCCGAG
>TU174099
NNNGAAAGTGGGCGCCTGCCCCGGGGCCCTGAAGCGGCTGCTGGGAGGAGAGCAGTGCAGCTGGGGCCCGGCCTACTGGTGCAAGAACATGGACACCGCGGCCCGCTGCAGTGCCGTGGAGCACTGCAGACGCCACGTGTGGAACTAAGCGTCGGCGGGGGGAGGAGGCGGGAGAGAACAGCACAATCAACCTGGGGAgaaaaatttaagaaaataacgTAGAGCtgctttgtaatttttaaatttggtctattttttatttaattttctgaagATCTGAAATGACAGCATTGGGAGAAACGTCTTTCCCTCTCTGATGAGCGGGTgtcttttgggggggggagcGGCCGGGGCTGCGCTGGTGAACGCACTGGATCTGTAGGCTGAGCAAGGGGGGTCGGCGGCTTTTTctcttttagtttgttttaatctgacTGGAGATGGTGAGGGTTTGCAGAGACTGTCCCAGTTGTCAGAGGCACTGTAGTGGGGGGGGCAATgctgaatttatttaatcttttctcACTGGATTATAATGTCGCTGGGTCCAGTGTGATGCATGATCCCGTGAGAGGGGGAGGGCGCCGGTGCTGTGCTGCTCTGCCGGTCTGTGGAGACCCCTGCCGCTCCCGGCCGGCTGAGACCCCCCCCATCACTGAGTGGAGGGGCGGTGGGACCCAGAAGGCTGTGCAGCACCGGACCCCCCCCATCGCTGGGTAACAGTCACTGCTCTGGGTAAAGATGCACCTGGTCTTCAGTCTAAACGGTTGGGCATTCCCGCCAGACCCCCGCACCCCCGCACTGCTGCCAGGGCTCGGTCCCGGCAGGCCGCCTGGGGGCGGCAGCTTGAAGCCTAGTGATCCGAAAATGAGcttaatatgcattttgtaGAATCGGCGCaagttttataattaaaatgtgttgtcttAGCtgtgactgtttgttttttgagctGCACTGAATCAGTTTGTCCTTGGCATGGGGGGGTGGCATGGCCACAGCGCCCCCGCCGCCCCGTCGCTGTTCATCATTAATACACGCCAACGCTGCCGCAGCAGGCGCCCTGTCAGCCGTTCTACTGTGCCAGGCTGTGGCAACGCCATCCACCTGGATTTAACAAAATACCAATAAAGAGTCTAAACCCGCCTCTGTGTCTTTCTCCTTCCATCTTGTGCCCTCGGTCCGAGCTGTGCTGGGTGGGGGGTG

Function

symbol description
psap Predicted to be involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway and regulation of lipid metabolic process. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in extracellular region and lysosome. Predicted to be active in extracellular space. Is expressed in blood; extension; peripheral olfactory organ; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in atypical Gaucher's disease due to saposin c deficiency and combined saposin deficiency. Orthologous to several human genes including PSAP (prosaposin).

GO: NA

KEGG:

id description
K12382 PSAP, SGP1; saposin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002743 True 1665 mRNA 0.62 12 806818 816761
TU174097 False 532 TUCP 0.61 4 812745 821591
TU174098 False 952 TUCP 0.58 5 808155 811005
TU174099 False 1206 lncRNA 0.57 2 805760 807058

Neighbor

gene id symbol gene type direction distance location
AMCG00002738 csgr03h10orf54 coding downstream 36937 763129 ~ 768823 (-)
AMCG00002737 NA coding downstream 54730 750635 ~ 751030 (-)
AMCG00002733 NA coding downstream 225796 564660 ~ 579964 (-)
AMCG00002732 wdr11,LOC107664693,LOC107741118,LOC107750394 coding downstream 292373 485836 ~ 513387 (-)
AMCG00002734 NA coding downstream 321460 483902 ~ 484300 (-)
AMCG00002742 mrps6,LOC107754760,LOC107702688 coding upstream 7216 828807 ~ 829169 (-)
AMCG00002745 micu1,LOC107754762,LOC107702683 coding upstream 19667 841258 ~ 843720 (-)
AMCG00002744 NA coding upstream 24972 846563 ~ 853730 (-)
AMCG00002750 NA coding upstream 82864 904455 ~ 907446 (-)
AMCG00002751 p4ha1,LOC106578992 coding upstream 89134 910725 ~ 919475 (-)
G138373 NA non-coding downstream 605 803573 ~ 805155 (-)
G138371 NA non-coding downstream 3993 801214 ~ 801767 (-)
G138352 NA non-coding downstream 57291 747494 ~ 748469 (-)
G138324 NA non-coding downstream 322157 483224 ~ 483603 (-)
G138303 NA non-coding downstream 418685 302082 ~ 387075 (-)
G138430 NA non-coding upstream 73421 895012 ~ 898417 (-)
G138535 NA non-coding upstream 667971 1489562 ~ 1518053 (-)
G138559 NA non-coding upstream 1111769 1933360 ~ 1933995 (-)
G138594 NA non-coding upstream 1262307 2083898 ~ 2084097 (-)
G138678 NA non-coding upstream 1680522 2502113 ~ 2502314 (-)
AMCG00002725 NA other downstream 616423 184121 ~ 189337 (-)
G138245 NA other downstream 658920 144926 ~ 146840 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other upstream 99197 920788 ~ 925398 (-)
G138741 NA other upstream 1896617 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 3107170 3928761 ~ 3953324 (-)
G138932 NA other upstream 3180059 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 6240882 7062473 ~ 7066350 (-)

Expression


Co-expression Network