AMCG00002785 (edrf1,LOC104964479)


Basic Information

Item Value
gene id AMCG00002785
gene name edrf1,LOC104964479
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2480058 ~ 2491883 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002785
GGACGCTCAGTGTGCGGGTTTGCGCAGCGGTTATGGGTCGTGCGAGTTAAAGTTATCAATAACGTTTATTGCATTAACTCAGTGTGCGGCCTACTCTTCGTATGGAGAGATTAGAAAACACCGCGTTGCTTTAGTGCACCTCCAGAAGTGTTacttattataaagtattattataaaGTTGTTATAAGTCATACTGTGCATTTCCGAGAAGCAGAGCCCGTCCGCCTGATCTGACGGCCCGGCCGGTGCTGCCCAGTCCACAGGCCGGGGTGGGGACCCGCAGCAGCCCATGACGCGTCCCCGTGAGACGGTGGCCCAGCCGGGGAAAGCTCTGGAAATCAGTCCGCAGAGGCGGCGCCAATGAGTGGGGAGAGGAGCGCCGAGCGCCCCGGGTCTCCGGGACCGGCCAGCGGGGACAGGGGGGACAGCAAGGGGCAGGACAGTAAGGAGGACAGCAGACAGGAGCTGGCGATGTGTCTGGGCATCAATGAGGTGAAGAGCCGCGCGGTGGTGAAGTACTCCGCCGCCCCCCCGCCCGCCACCTACGCGCTGCTCCAGGAGAAGACCGACCTGAAGCTGCCGCCCGCCAACTGGCTCCGCGAGAGCACCCAGCTGGGCCCGGCCGGCACCACCGTGCTGGGCTCCAGCAGCAAGAGCAAGCCCTTCTCCAGCTTCGGCATGGCGTACGACTTCATCGACTCCATTGGGGACGACGTGGACGTTGTGTCCGATTCCGAGAACATTAAGAAGCTGCTGAAGATCCCCTACAGTAAGTCTCACGTCAGCATGGCGGTGCACCGCGTGGGACGCACACTGCTGCTGGACGAGCTGGACATCCAGGAGCTCTTCATGAGGTCTTCTCAGACGGGCGACTGGACCTGGCTAAAGGAGTTCTATCAGAGGCTGGTGGATCAGAAGTGGCAGAGGAAAAAGAAGAGCAAGGAGCAGTGGTACCAACGGGCGATCCTGTCCAAGTTTCTGTACTACAGCATCAACGGCGACGGGGCAGCGGAGCCGGTGTCGAACGATTTGGACGAGGCCTCGCGCTCTGGGGAGGAGGAGCCGGGAGCCGGGGAGCTGGGCCCATCATGGCCCGCCACCTTCGCCAGCCCTGCCTCCGAGCCAGAGGACCCCGAGGCAGACAAAGAGGACAGCGTTCCTCTGGAGTTCGCTCTGGGACACGTGGACTCGTCCCTGAAGGAACAGAACCTCCCCACGCTGGACAACAACAAGCCAATAAACGTCCTGACGGGAATCGATTACTGGCTGGACAACCTCATGTGCAACGTGCCTGAACTGGTGATGTGCTTCCACGTCAACGGCATTGTGCAGAAATACGAGATGATCAAGACGGAAGACATCCCAGACCTGGAGAACTCAAATTTCTCCACCCGGGTCGTGAAGGACATCGCCCAGAACATCCTGTCCTTCCTCAAGTCCAACTGTACCAAAGAGGGCCACACCTACTGGCTGTTCAAAGCCAGCGGCAGCGACATCGTCAAGCTGTACGACCTGACCACCCTGTGTGAGGAGGCGGCCGAGGAGAAGTGCCAGAACCCCTTCACTCTGCCGGTGGCCGTGCTGCTGTACAAggTGGCCAGCAAcatgatgatgaagaagaacCAGAACCGGAAGCACTACGGCACCATCCGGACACTGCTGCTGAACTGCGTTAAGCTGCTGGACCACGATCGACACCCTCAGATCATCGCCTCGGCCAACTACATGCTGTCGGAGCTGTTCCAGCTGGACGAGCCCGTGGAGGGCGGCGAGGAGGCGCTGCGGGGGGGTGGCTCGGAGGACAGCTACagcgaggaggaggacgaggaggaggaggagctgccCGAGGACAGCGACGAGAACGGCTCCTACAGCACCAGCTCCGACCCGCCCGACGACAGCAAGGCGGTGGCCATCATCCGCTCCGTGGGGGAGCTGTCCGTCCCCGAGAAGTACAAGTCCACCCACCAGATCAGGCCCAGCTACGTGTTCCCGGTTTCCCCCGACAAAGAGGAGCGCTGCCGCCACGTGCTGAGCTACGTCCTGAAGGGCCTGAAAGCAGTGGACAGCAGCATCAAGAAGGAGAGCGACCTCCCAGCTGCCGACCCCAACACTCCCATCCCCCTGAAGTACGAGGAGGGCAGCCAGAGCGCCGGGCCGAGCACCGTGGAGAAGGACATGGCGCTCTTCCTGGACAGGGCAGCCCCCTCTCGGGAGGACTTCAAACACCCGACGCGCTCAGGGATGATCCCGGGCTCCTGGCAGCACCGCATGAAGCTGCAGCTCTTCCTCAAGGCCTCCCGGGCCTACTACGTCCTGTCCGACGCTGCCACCAACCTGCTGAAGTACGGCCGGGCCCTGCGGTACATCAAGCTGGCCCTGCAGTGCCACGACGCCTACTGTGCGGTGAGCCCCGGCCTGCACCCCGAGGTGCTGCTCTTCCACAGCCAGTGCCTGGCGCTGTGCGGCGACATCCAGCTGATGCTCGCCCAGAACGCCAGCAACCGCGCCGCCTACCTGGAGGAGTACAGCTACCAGACGCGCGAGGACCAGGAGATCCTGCACTGCCTGCACCGCGAGTCCAGCTGCCAGGCCTTCAACCTGGCCACGGACCTGGCCACGGACCCCGAGTACCAGCTGACCGTCAGCTGTAAGTGCTATGAGGCGGCGCACGAGCTGCTGACCTCGGGGGACCTGAAGGAGCAGAGCCCGGAGCAGCTGGCGCAGGTGCTGAAGAGACTGGGCAACATCCGCAACGAGATGGGCGTCTTCTACATGAACCAAGCGGCCGCTGTGCAGACCGAGAACACAGTGACCCGCGCCGTGTCGGCGGCCGAGCAGGAGCTGTGGAAGAAGAGCTTCTCGTGCTTTGAGAAGGGCATGAAGGACTTCGAGGCCATCGGTGACGCCACCAACACCGCACTGCTGCTGTGCAACACAGGCCGGCTGATGCGCATCTGCGCCCAGGCCCACTGCGCCGTGACCTCCGACCTCCGCCGCGGGGAGTTCTCGCCCGAGGAGGCGCTCTACTACAATAAGGCCATCGACTACTACCTCCGGGCCATGAAGTCGCTGGTCAGGAGGGAGAGCCACGCCGTGGTGTGGGACTCGGTCAACTGGGAGCTGTCCACCACCTACTTCACCCTGGCCACCCTGCAGCAGGACTACGCGCCTCTGTCCAGGAAGGCGCAGGAGCAGATCGAGAGGGAAGTGACCGAGGCCATGGTGAAATCTCTGAAGTACTGTGACCTGCACACCGAGTCGGCCCGGCAGCCCCTGTACCAGTACCGGGCCGCCACCATCCATCACCGGCTGGCCTCCATGTACCACAGCTGCTTCAGGAACCAGGTGGGGGACGAGCACCTGAGGAAGCAGCACCGCGGTCTGGCCGAGCTGCACTACAGCAAGGCTCTCATCCACAGAGAGCTCCTGGAGGAGCAGAGCCAGGTGGACCCTCCGGACCGCGGCACCGAGGGAACCGGCTCCCCAGACCCCGCCGCCTCCTCGGGCCTCAACACCCAGGAGGTGCAGAGGCTCGTCGCCGTGTTCGAGCCCAGCTTCTCCttcctgctgctgcagctggtcAAGCTGACGACGGCCACCAAGCGCAAACCCAGCGGTGCGCACGAGGAGGAGCTGGTGAAGACGTACAAGCAGCTGTACTCGACGCTGCTGCGCGCGGACAAGGCGGCGCCGCTGCCCGGCAGAGTGGAGCTCATCCTGTCCCTGCTGGGCCAGCTGGGCCCCGGGACGAGCGGTGGGGACAGCGAGGCGTCCTGACAGCCTGGGGCCCACGAGGGGGGACTCTCACTGTACAGCCCGGGACCGGAGAGAGGAGGGAAAGACACGCAAAACGCAAATGGACTTGAATGTGACAAGTGCCTTGCCCACGCTGCTGAAACTGTCGCCTGTTCTAgacttgatttgtgttttgtacaaAGGAAAGCAAATATTCTAACCAGCAATATTTCACCAGGGGtggagctgttttttttattttctatcctCTCTTACtgctatttttttaacatacaagCTGTGTCGGCTACTAGCATGTTCTGGCGTATATAACTCATGTTTTCACACAGCAGTGCACGTTTCTCTTCAAAGCCAGGCGTGTTCAGACTTCAGGACGAGTCGGCGTGTGATGAGTGCAGCGCAGTTGCGTACCGTTGTGTTACGGCTGCTGTTTGTGCAGAAGCTGATGTGCGAGAAGCAAAAATCAGCAAAAGCGATCTGTGAAGAGAAAATGGAAAGTGTGCAATAAGCAGACAGTGATATGTGTGAAGGAATCTTTGGATGTGTTTGGCTGTTGGaggtattgtgtgtgtgtgtgtgtgcgtttccaCCACTCACTCAAATAAaggtctttttttca

Function

symbol description
edrf1 Predicted to be involved in positive regulation of transcription, DNA-templated. Orthologous to human EDRF1 (erythroid differentiation regulatory factor 1).

NR:

description
PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX32

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002785 True 4378 mRNA 0.61 24 2480058 2491883

Neighbor

gene id symbol gene type direction distance location
AMCG00002781 NA coding downstream 13363 2460051 ~ 2466695 (-)
AMCG00002783 NA coding downstream 29917 2445929 ~ 2450141 (-)
AMCG00002782 NA coding downstream 35469 2441871 ~ 2444589 (-)
AMCG00002775 dock1,LOC102795082 coding downstream 150867 2289108 ~ 2329191 (-)
AMCG00002772 dock1,LOC107740868 coding downstream 311479 2127630 ~ 2168579 (-)
AMCG00002790 zranb1 coding upstream 143408 2635291 ~ 2654410 (-)
AMCG00002791 fam175b coding upstream 169023 2660906 ~ 2671073 (-)
AMCG00002799 NA coding upstream 256229 2748112 ~ 2749307 (-)
AMCG00002797 NA coding upstream 258906 2750789 ~ 2751466 (-)
AMCG00002798 NA coding upstream 266991 2758874 ~ 2759867 (-)
G138594 NA non-coding downstream 395961 2083898 ~ 2084097 (-)
G138559 NA non-coding downstream 546063 1933360 ~ 1933995 (-)
G138535 NA non-coding downstream 962005 1489562 ~ 1518053 (-)
G138430 NA non-coding downstream 1581641 895012 ~ 898417 (-)
G138373 NA non-coding downstream 1674903 803573 ~ 805155 (-)
G138678 NA non-coding upstream 10230 2502113 ~ 2502314 (-)
G138720 NA non-coding upstream 199547 2691430 ~ 2691869 (-)
G138737 NA non-coding upstream 215986 2707869 ~ 2708075 (-)
G138738 NA non-coding upstream 222494 2714377 ~ 2714688 (-)
G138742 NA non-coding upstream 228529 2720412 ~ 2720704 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 1554660 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 1658467 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 2290721 184121 ~ 189337 (-)
G138245 NA other downstream 2333218 144926 ~ 146840 (-)
G138741 NA other upstream 226325 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 1436878 3928761 ~ 3953324 (-)
G138932 NA other upstream 1509767 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 4570590 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 4856928 7348811 ~ 7352821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_03054431_03066827 EDRF1 coding CI01000310 null 3054431 ~ 3067384 (+)