AMCG00002791 (fam175b)


Basic Information

Item Value
gene id AMCG00002791
gene name fam175b
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2660906 ~ 2671073 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002791
ATGGAAGGGACTACAATTCCCGAGAGCCCCAGCGAGGGCTCGGCGGCCGCGGGGGCTTGTGGGATAGGTGGGGATGTTTCCATCATGGCGGCTTCCATTTCGGGCTACACTTTCAGTTCGGTGTGTTATCACAGCGCCAACAGCAACTCGGATCACgaAGGTTTCCTGTTAGGAGAAGTAAGGCAAGAGGAGACTTTCAGCATCAGCGATTCGCAGATTAGCAACACCGAATTTCTGCAAGTAGTCGAAGTCCATAACCATGAGCCGTGCGCACATCTTTTTAGCTTTTATGACTACGCAGGTAAAGTCAGTGAGGAGAAACTCAACAGAATCCTCAAGGACAGAAGAAAAAACGTCATTGGCTGGTATCGGTTCAGGAGGAACACGCAGCAGCAGATGTCCTTCAGGGAGCAGATCATCCACAAGCAGCTGACCCACATTCTGGGCATGCCCGACCTCGTCTTCCTCCTCTTCAGTTTCATCTCCACGGCCAATAACTCTACGCACGCGCTTGAGTATGTGCTCTTCAGACCCAACAGAAGGTACAACCAGAGGGTTTCTCTCAGCATCCCCAACCTGGGCAACACCAGCCAGCAGGAGTACAAAGTGTCTTCTGTCCCGAACACGTCGTGGAACTACGCCAAGGTGATCAAGGAGCACGGCGCTGAATTCTTTGACAAGGATGGAGTCATGAAGGACATCAGAACCATCTTCCAGgtgtacagtgtgttacaggAGAAGGTCCAGGCGGTCTGCGCCGAGGTGGAGCAGAGCGAAAGTGTCAAAGAAAAGATTCAAGACGAAGTGAACAAACTGAAACAGCAGATCACTCTCAGGAAAAGGAAAAgcgaagaggaagagagaaGAATCCAGGAAGTGGCGGCAGCGGCAGCAGTGGCAGAAACAGTCGAGGACTCGGACTCAGAGCTTCCCCCCACCTCCAGGGTTGTATTCCCTGAGGCAGCACCGGAGAGGCCCGGCCCGGAGAGACCCGGCCCCTCGGACACGCCTCCCCCGTACGCAGATATGGTTCCCCGGGACGCCCCAGTAGCGGGCAGCTCAGAGCCCAGCACGGTGCTTCTGCCCCGCCCTCAGGCGGTGGGCTCCTCGGACCACGCGCCCCTGCCCAGCCTGCCGATCAGCCACGGCGCCGGTGCGGAGTACTCAGGGAACGGGGACGGGTCCAGCACTGACTCCTCGGACAGGCGGGCGGCCGGACAGGAGGACGGTGacgaagaggaggaagaggacagcagcagtgagccGGAGATCTCGACCCAGGGGCCCTCAGAGTCATCCGACGGGGAAGTGCTGGCGACAGCCCAGGGGCGGCCGGCTGCCCTGAGGCCCGACGGAGACGCCCGCAGCTCGCAGACCTCTCAGATCTGAGCGCCGACCTGTGCTGCCAgatgggaggggagggggttctGAACCGGATGAGGGATTTATCCGTTTGAGAAAAGGACAGAGGATTTAACTTCTCAATGTTGACCGCATGACAACAGGACGCGTAGAAGAGGAGCACACGGCTCTGgggaatgtttgtgttttggtttgttttaaatttggtcCCCATCCGTGGGAAGGCGGGACTCCAGCGCAGCCCGGAGAGCGAGGCCGGCGCCGCCCGGGGGAACGGAGGggcttttacagttttattgtttctttggGGAGGGGAGTTACTTTTATGTAAAAAGGCTGCTTGAGAAAATGAAAACGAATTAAACCCTTCCGGTCGGTCGGTGCCACATTGAGGCTAGGTTTGGTTGTGCCAGGAACACAACCTGCCCTTCCTCAATGGGTCTGCTGTCTGTTAATGACCTAGATAATCAAATCATACCATTACCTCTTGCACTATTTTGCcttctttttacatttatttaagaggaaaagggaaaacaaagttGTGTGCGGCCTTCACCttcgttttgttttaaatgagccAAATTAGTGGTTAGTCAGTGACGTTTGGTTTAACGAAGCCTGatcagaacaaagaaaaaatatatatatattatacttgcTTTAGCTTGCACGTTTCAAGACTATTTATGTGAGCAGGACTGTCATTggcaggtttgttttgtttgttttcttaacatCGATTAGTctcttttattaataatgtgttgCCTGTTTCCTTCACCAATTGAGATTTGGGAGAATGTTATTTTAGTGATGTAAAGCAACTGGGTTGTCGATACCACAGCACAATGTAAATCTCTCGATCTTCTCCACTCACGCTGACACGACGCGCTGTTTGGTGCACTTAATTTGcaaacttttatatttttctcatgcTTTACCGATAGTTATGTTGTGCCACAAATCTGTATGCTTTAACATTTGGGGGGCTGCCAAGCTCGGTGTTTTGTGCAATGTGTGAGATCTGCAGAATAAGCGTTAAGTAGATCATGACACCCGCGGGTGAAACTTTGAAAGCTAGCACCATAAGCAGGGAAGTCTGCATATCTCCTGcttgtactactactactactactactactactactactacaactaatacTATGTGCTCCTGTTTAGGAAAGAGAGTTTCTGTTCTGTGGGTGTTGAAAGGGAAGCTCTTGCAGACCTCCAGTTGTTTGACCCAGTTTGCTACCGATGGTACGCGTTCATAACGCACAGGCCTTCCTGGATCGCCGAGTCAGGGCTCCGATTTCAAGGACGGGAAAGAGACGTGAATCGCAAAGGAAACGACAACTACCACAACCACAAGGACAAACACTTCTCACAGCTCTGGTGCCTTCCGTTTCTACAATTATATCACCGAATCAGAAAGGCGGGAGGTCCCTGCTGGCCGTTTGAGCACTGTAGGACTCGATGAAGGACTGACACTGGACAGAGACTCTGGGGCTGATTCATTCCCAAGCACAAAGTCGGATGACAAAGTACCCGAGTGTTTACTGAGAGAGAGGCGACGGGGGCTGCATCCACTATTGGAACGTGTTTTTCCACAGAAGTTTTGATTTCAGCCTCAACTTGATTTGTATGGagtaataaagtaaacattGGTTA

Function

symbol description
fam175b BRISC complex subunit Abro1

NR:

description
PREDICTED: BRISC complex subunit Abro1

GO: NA

KEGG:

id description
K20799 FAM175B, ABRO1; BRISC complex subunit Abro1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002791 True 3036 mRNA 0.51 10 2660906 2671073

Neighbor

gene id symbol gene type direction distance location
AMCG00002790 zranb1 coding downstream 6496 2635291 ~ 2654410 (-)
AMCG00002785 edrf1,LOC104964479 coding downstream 169023 2480058 ~ 2491883 (-)
AMCG00002781 NA coding downstream 194211 2460051 ~ 2466695 (-)
AMCG00002783 NA coding downstream 210765 2445929 ~ 2450141 (-)
AMCG00002782 NA coding downstream 216317 2441871 ~ 2444589 (-)
AMCG00002799 NA coding upstream 77039 2748112 ~ 2749307 (-)
AMCG00002797 NA coding upstream 79716 2750789 ~ 2751466 (-)
AMCG00002798 NA coding upstream 87801 2758874 ~ 2759867 (-)
AMCG00002802 gpr26,LOC107387797,LOC100699461 coding upstream 294921 2965994 ~ 2973796 (-)
AMCG00002807 bub3,LOC106575478 coding upstream 444788 3115861 ~ 3121097 (-)
G138678 NA non-coding downstream 158592 2502113 ~ 2502314 (-)
G138594 NA non-coding downstream 576809 2083898 ~ 2084097 (-)
G138559 NA non-coding downstream 726911 1933360 ~ 1933995 (-)
G138535 NA non-coding downstream 1142853 1489562 ~ 1518053 (-)
G138430 NA non-coding downstream 1762489 895012 ~ 898417 (-)
G138720 NA non-coding upstream 20357 2691430 ~ 2691869 (-)
G138737 NA non-coding upstream 36796 2707869 ~ 2708075 (-)
G138738 NA non-coding upstream 43304 2714377 ~ 2714688 (-)
G138742 NA non-coding upstream 49339 2720412 ~ 2720704 (-)
G138799 NA non-coding upstream 389488 3060561 ~ 3113082 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 1735508 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 1839315 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 2471569 184121 ~ 189337 (-)
G138245 NA other downstream 2514066 144926 ~ 146840 (-)
G138741 NA other upstream 47135 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 1257688 3928761 ~ 3953324 (-)
G138932 NA other upstream 1330577 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 4391400 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 4677738 7348811 ~ 7352821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_03608917_03613975 FAM175B coding CI01000189 null 3608235 ~ 3613975 (-)