AMCG00002799


Basic Information

Item Value
gene id AMCG00002799
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2748112 ~ 2749307 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002799
atgAGACTCACTGACGAGAGCGAGTCTGGTGTGGAGGGGCCGTGGCTCTCGTTCTGCCCtgatccccccccacccacaccgctgtgtgtttttcagtttgcttGTGACGTGGAGGCCGAGGTGGTGGGGAAGCCGGCCCAGATGTTCTTCAAGAGCGTGTTGGCAGACATGGGCCTGGAGCCGCACGAGCCCCTAATTGTTCTTCTCGCGGCGCGGGCCTGTCCTGTTACCGCGGCGCGGCGCTCCCAGAGGCCCGGCTCCATCTCCGTCTGCCCTCGGTTGGTTCGAATCGCCAAACCCTCTGGATCGCACAGATTGACCGCAACGCCCCGGCGCCAAACGCTTTCTGATGGCGTCCAAACGGGGACGGGCCCGGCTGAGGTGCGTAGTCGGCGGGTGGAAGGGTCCCACTGTGGACTCCCTGCCACCACGGGCGAGTGGCAAAGTCTGTTCTCCATTGACCCAAACACCCTCAGGGGCCTCTTTAACCAGACAAGCCGCCCGGCAGCCCAGTCCTGGTGA

Function

GO: NA

KEGG:

id description
ko03015 mRNA surveillance pathway
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002799 True 522 mRNA 0.64 3 2748112 2749307

Neighbor

gene id symbol gene type direction distance location
AMCG00002791 fam175b coding downstream 77039 2660906 ~ 2671073 (-)
AMCG00002790 zranb1 coding downstream 93702 2635291 ~ 2654410 (-)
AMCG00002785 edrf1,LOC104964479 coding downstream 256229 2480058 ~ 2491883 (-)
AMCG00002781 NA coding downstream 281417 2460051 ~ 2466695 (-)
AMCG00002783 NA coding downstream 297971 2445929 ~ 2450141 (-)
AMCG00002797 NA coding upstream 1482 2750789 ~ 2751466 (-)
AMCG00002798 NA coding upstream 9567 2758874 ~ 2759867 (-)
AMCG00002802 gpr26,LOC107387797,LOC100699461 coding upstream 216687 2965994 ~ 2973796 (-)
AMCG00002807 bub3,LOC106575478 coding upstream 366554 3115861 ~ 3121097 (-)
AMCG00002809 NA coding upstream 375617 3124924 ~ 3133886 (-)
G138742 NA non-coding downstream 27408 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 33424 2714377 ~ 2714688 (-)
G138737 NA non-coding downstream 40037 2707869 ~ 2708075 (-)
G138720 NA non-coding downstream 56243 2691430 ~ 2691869 (-)
G138678 NA non-coding downstream 245798 2502113 ~ 2502314 (-)
G138799 NA non-coding upstream 311254 3060561 ~ 3113082 (-)
G138873 NA non-coding upstream 626941 3376248 ~ 3378038 (-)
G138906 NA non-coding upstream 1175860 3925167 ~ 3928618 (-)
G138948 NA non-coding upstream 1326308 4075615 ~ 4076838 (-)
G139024 NA non-coding upstream 1706485 4455792 ~ 4456002 (-)
G138741 NA other downstream 28693 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 1822714 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 1926521 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 2558775 184121 ~ 189337 (-)
G138245 NA other downstream 2601272 144926 ~ 146840 (-)
AMCG00002828 NA other upstream 1179454 3928761 ~ 3953324 (-)
G138932 NA other upstream 1252343 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 4313166 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 4599504 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 5181859 7931166 ~ 7938241 (-)

Expression


Co-expression Network