AMCG00002958 (hif1an,fih1,LOC106577208)


Basic Information

Item Value
gene id AMCG00002958
gene name hif1an,fih1,LOC106577208
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 7833091 ~ 7843208 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002958
ATGGAGGCAGCGCCTGCGGTGGCTGAGGCAGAGGCAGCGGGGACCGAGGGTGGTACCGATCCCTCCGAGGTCCAGAGTTCGGGTTGGGACGCCTCTCAGCTCCGCAAGTATCCCTTCCAAACCCGGCCCATCCCCCGGATGTCGCACGCCGACCCCCGGGCTGAGCTGCTCATAGACAACGAGGAACCAGTGGTGCTGACAGACACAAACCTTGTCTACCCAGCTCTCAAATGGGATCTGAACTACCTGCAGGAGAACATAGGGGGAGGAGACTTTTCTGTGTACATCGCCGAGAATCACAAGTTCTTGTACTACGACGAAAAGAAAATGTCCAACGTTGAAAACTTTATTCCCAAGTCAAGACGTGTAGAAATGAAATTTTCAGAATTTGTGGACAAGATGCGGGAAATGGAAGAATCAGGAGGAGATGAGAGagtttATCTGCAGCAAACGCTGAATGACACTGTAGGACGGAAAATAGTGGTGGATTTTCTGGGATTTAACTGGAACTGGATAAACAAACAGCAGGCCAAACGAAACTGGGGACAGCTAACATCTAACCTCCTTCTCATAGGCATGGAAGGAAATGTTACTCCAGCACATTATGATGAACAACAGAACTTTTTTGCACAAATTAAAGGCTATAAGCGCTGTATACTGTTTCCTCCTGACCAGTTTGACCAGCTTTACCCATTTCCAGTCCATCACCCCTGTGATCGGCAGAGTCAGgTTGATTTTGAAAACCCTGACTATAACAAGTTTCccaatttcaaaaatgtaattggttaTGAAACTGTTGTGGGCCCAGGAGATGTACTGTACATCCCAATGTGGCATCACATTGAGTCCTTATTACATGGAGGAATTACTATCACAGTAAACTTCTGGTACAAGggaGCACCCACTCCAAAAAGGATAGAGTACCCACTGAAAGCTCATCAGAAAGTGGCTATCATGAGGAATATAGAGAAGATGCTGGGAGAGGCTCTAGGAGATCCACAAGAAgTTGGGCCTTTGTTAAACATGATGATCAAAGGGCGTTATGATCAGACTTTCAGTTAATGGCATCTGGATGGGGACATTTCTTATGATTTTATGCTGGAGACATTGGagatgactgtgtgtgtgcgcgtgtgtgtgtgtgtgagagagagatgtggtGCTAGTACTGCATGGCAGCACTCAAACACCTTGGAAACTTCTCTCTACCTTCCAGTTTGCTTTGATCATCTACCAGTTAATGTCAGTGTGGATCCTCCTGTGTGCTTCTGTGCCTATAAAAAGACACTTTGGTAACATTAATACGTGCCATTAGGGAGCTTCATTGCTGAACATTATACACACAGCATGGGTTTGTACCTGCGGTGATTGGTCATTCAGGAAACCAGCTAAAGACAGGTAATAAGGAAAGGAAGACCTACATTATATCTGTTGATGCTTAATGGTACCCAATTCGTAATTGCTCAAGTGAACCGAGTCTTGAAATGTGAACTATTCCAAGAATTAAAAGGTTGTCTTTAAGGAAATGTAATGCATGTCATAGTTACCCAGTTGTGGATTTGATGTGACAGAAAATAAGCTCTAATCTTATTCCTATTCCAGCCCAGCCATGactatcaaaacaaaaaagaattgTATATTCTGTCCTCAGTGTTGAATCATATCCCACGTGTGATATTCCTTACTCTAGATCATCTTCAAGGTTACATCCCTCTTTCagtgttaaagaaaatgtaacagtCCAGCaattggcaaaaacaaaaagtcctATTTTGCACCTGATATTCCCTCACAAAATAGCCTGAAAAGTTTAAGGTAATACAGTGCCTCTGTGGCCTGCACTGCTGATTTATAAGTGAAGAAATGACGGGAAAAGCAGTAGTAGCAAAGTATTGGCCTTTAATAGACAGTAGCACAGTATTGTAACAGCTTAGACTTCTGAGAATACCGAAATCTTACTCTCCAAATAAATACAGGTATGAAAGGTCGGCTTAAACGTCACATTAGACTGGTGCTCTAAAATGCTCAGAACTTTTGaagaatatacatttacataaatatatttgttttcttttttttatgtttattgcCCTATAAAAGAGGTTTTAAGGAAGTGAACTAAACTAAAACGTCACATGCCATATAGGTGTATGAACAGCATTGTGCCAGGGTGTAACTGAAGGaattttgtgctgtttttaaattcttCGGGGTTGATCAATTCAAGTAAAATTATTGCTGATTAATTGTAggttataaatattttgtcaatttttgtgtttttgtaatttttatatactttaatGTGGTAAACTTCTATTTACTGTATGTGGTTTGgccttttgtaattaaaatcttggttaattatactgtatatggTACACAAACACTTGACCTTAATTTACACATggtaaatttaacattttatggGTTTTTTTAGCTAAGGAATGGGtatcagactccagtcctggggggccgcagtgtctggtggtttttgttccaacagaagatcccaattaattaatgtcattattcaCTTAGGTAGGCTTATCAaaaactttcatatttaatttttattgcCAATGgctcaaaacattgaacccaccgaacatttcagagtctggagagaaatGTTagtcatccagttaattgtttaattagaccaattaaggagccaagagctg

Function

symbol description
hif1an Predicted to enable several functions, including 2-oxoglutarate-dependent dioxygenase activity; ankyrin repeat binding activity; and transition metal ion binding activity. Acts upstream of or within negative regulation of vasculature development and regulation of vascular endothelial growth factor receptor signaling pathway. Predicted to be located in perinuclear region of cytoplasm. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; immature eye; midbrain hindbrain boundary neural rod; and midbrain neural keel. Orthologous to human HIF1AN (hypoxia inducible factor 1 subunit alpha inhibitor).

NR:

description
PREDICTED: hypoxia-inducible factor 1-alpha inhibitor

GO: NA

KEGG:

id description
K18055 HIF1AN; hypoxia-inducible factor 1-alpha inhibitor (HIF hydroxylase)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002958 True 2684 mRNA 0.41 8 7833091 7843208

Neighbor

gene id symbol gene type direction distance location
AMCG00002956 fbx37,fbxl15 coding downstream 6864 7817761 ~ 7826227 (-)
AMCG00002950 ghitm coding downstream 365077 7459932 ~ 7468014 (-)
AMCG00002951 NA coding downstream 386519 7434251 ~ 7446572 (-)
AMCG00002947 NA coding downstream 425573 7402581 ~ 7407518 (-)
AMCG00002948 chat,LOC107588646,LOC107683741,LOC107707518,LOC108245700 coding downstream 461478 7363052 ~ 7371613 (-)
AMCG00002957 wnt8b,LOC103355142,LOC102196387 coding upstream 26393 7869601 ~ 7873602 (-)
AMCG00002963 scd,LOC107659656,LOC103362465,LOC107715223,LOC108246230 coding upstream 52145 7895353 ~ 7901361 (-)
AMCG00002964 NA coding upstream 66341 7909549 ~ 7910955 (-)
AMCG00002962 NA coding upstream 82802 7926010 ~ 7927595 (-)
AMCG00002967 NA coding upstream 154494 7997702 ~ 8005740 (-)
G139752 NA non-coding downstream 374600 7455544 ~ 7458491 (-)
G139668 NA non-coding downstream 613899 7218869 ~ 7219192 (-)
G139639 NA non-coding downstream 759555 7001665 ~ 7073536 (-)
G139593 LOC100846954,LOC107575789 non-coding downstream 1322966 6482267 ~ 6510125 (-)
G139496 NA non-coding downstream 1674328 6157743 ~ 6158763 (-)
G139825 NA non-coding upstream 102844 7946052 ~ 7946521 (-)
G139867 NA non-coding upstream 267817 8111025 ~ 8115245 (-)
G139881 NA non-coding upstream 338082 8181290 ~ 8181576 (-)
G139902 rps24,LOC106591086 non-coding upstream 387161 8230369 ~ 8234284 (-)
G139937 NA non-coding upstream 651646 8494854 ~ 8495297 (-)
AMCG00002945 NA other downstream 480270 7348811 ~ 7352821 (-)
AMCG00002935 LOC106589936 other downstream 766741 7062473 ~ 7066350 (-)
G138932 NA other downstream 3830287 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 3879767 3928761 ~ 3953324 (-)
G138741 NA other downstream 5113672 2718208 ~ 2719419 (-)
AMCG00002970 cj104,anapc16 other upstream 87958 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 642153 8485361 ~ 8494596 (-)
G140006 NA other upstream 1003824 8847032 ~ 8847840 (-)
G140015 NA other upstream 1393450 9236658 ~ 9237730 (-)
AMCG00003017 NA other upstream 1753735 9596943 ~ 9607316 (-)

Expression


Co-expression Network