G138535


Basic Information

Item Value
gene id G138535
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 1489562 ~ 1518053 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174258
ttcacagacaagaaatactttaattaaatattgtgtaaaatgaacatttttatacagttaaatATCTGAAAAAATGTACAGATAAAACAATCTTATTGTAGTTTTCCCTAACAGTAATGTCTACCATTTAGTGAAGCGTTCAGATTGAAGGCAACGAAGCAATGAGTGCATTGACTAATTAATCTAAAACACAAACCAGATTGCATTAATGATGAAACTTGCAAACTTTCTTTCCATGACCTTGAGTCTCTCTTACTTTCAAGGTGACTTCTCAGGCTTTTCCACTTAGCTAAGCCTTGTTGAGCTATCACAAAGCAAATGCATTGCacattcatcatttattttttttacagcgTCTACCCTTGCTTCCtcatggaaaataaaacttgtGTGCAGTTTGCCAAGAAGGAACACCCCTTTTTGGTTTGAACCTTGATGCTGTAGTCTGCAAAACATTacatgctatatatatatatatatatatatatatatatatatatatatatattttttttttttacaaagtgtTCAGTgcaaataacacaacaaaacaaaaaaacaataaataaaaataatattttgcctCCATCTGTTAATTTGGCACTGTCAGGAACGTAATACccccaaaagaaagaaaggtgaATAAAGAAAGAATTTAAGATCTGATGCTACAGTACTTTTTTTTGGAATTGTTACAAAATgtcatgtacaatatataacatttatactGGTTCTTGACCtatgttacaatataaaaatcTAATCTTTAAACACTTCTTAGACTTTCATACTGATTTGCAGaatacagcaaaaacaacaaatgaaatagtcaaaagggggaggggtcacaatatatttttttattttagtaaaaaatgCTTGTGCTTTTTACACCATTGACCATCCGTATGGAGTGATGATTGGCAATTGTGGTGTAAGGTTGTCATTAAAACGGCAGAAAAGTTACTCTCAAGAAGTCCACTGTTAAGGCGTCataagagttttgtttttttctgacaaattttaataaaacatcagTGATTAATTTACGATTTCCATTCCAAATTTAGACGTCTTAATTTTTGTTCCCTGTAAACACAGTTCAGCTATGTGGCAAAGTCATGGGTGGCAGgtttaaaaatgactttttacATTCTACAAAAAAATTTACAACCACAAATCGAATCATCTCTCTGTGGCTGTCttacatgcacatttttctactAGTATTCATTACAGCCATGTGTcacaaacaatttattttgacTATACAACAAACAGGTTTTTATTCAAAAAATTATTCGTTTAGATAActtaaaaattaatataaaaataaacaatgaatttGACTTttcctcaaaataaaaaaaatggacgGAAAGTCTTGACAAAAGTAACAAAatttctgaaatacaaatgaaacgTATGAACATTGCAAtctagtaatacaaaaaaagcgAATGAAGGCAACGATTCTTGGCTTAATGCTTCTGTGCTGCATCACAATATCAGGCCATGACAAACGATACGTACAAGatcgaaaacaaaaaaaaggatggAAAGCAATATACAAAATTTCaaagataaatacaatatttataattgataTGTTACAAAAAATCCCCTTAGTGACCGCAAGTGTTTATGTGAAAGAAAGTGTTGCAATGGGTAAGACTATTCCACCCCTCGCCGTTCCGCGCGAGGGATAAAACTGTGTACTAAATATTTAAGTGGATCTGAAAAAATTCAAGACAAGTGTATAAATATTTAGCTACAACTTTGGCAAAATCACAAAAGTCTACAATTTTATAaccacatacaaaacacattagGGAAGAGGGGAATCTAGAAGTAAAAGGACAACTCTCTGGTACAAGAAACATAGACTTCACAGTAGCCTAAGAATGCAATAGTATACAGTGCTAGCAAAAAGTTGAAAAACATTGCAGTTCACACTTGCTTTACAGGAAGCTCTAGCAGTGgaagtatattttttttaaccaacagACAGTAGCGTTTCATCTCTGTCAGTGTGCTTGTTGAAGGCAAGAGAAGAATTTTTGCAATATCAAAGTTACAATTTCTAACTACAATAAGTTAcaaagttcatttttttaagatgaataAGCATGATAAAATTTTCCCCCCCAGCATGTCCCCGTGTTCCCGTTTTTACGTCgatttcttttttagttttgtctactaaatcatatattttatattctttccAGTTCGATTGGCTCATACGTTCTTGGCCccacccccctttttttttttttttttttttttttttttaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174258 True 2297 lncRNA 0.32 2 1489562 1518053

Neighbor

gene id symbol gene type direction distance location
AMCG00002764 glrx3,LOC102791736 coding downstream 79434 1395011 ~ 1410128 (-)
AMCG00002758 ppp2r2d,LOC105009682 coding downstream 385664 1094995 ~ 1103898 (-)
AMCG00002755 jakmip3 coding downstream 420168 1035547 ~ 1069394 (-)
AMCG00002756 NA coding downstream 454963 1033446 ~ 1034599 (-)
AMCG00002754 dpysl4,LOC107582189,LOC107653119,LOC107706606,LOC107654562 coding downstream 457698 1020313 ~ 1031864 (-)
AMCG00002767 mgmt coding upstream 23133 1541186 ~ 1551984 (-)
AMCG00002769 NA coding upstream 400987 1919040 ~ 1944943 (-)
AMCG00002768 NA coding upstream 432330 1950383 ~ 1968438 (-)
AMCG00002771 NA coding upstream 538374 2056427 ~ 2058241 (-)
AMCG00002772 dock1,LOC107740868 coding upstream 609577 2127630 ~ 2168579 (-)
G138430 NA non-coding downstream 591145 895012 ~ 898417 (-)
G138373 NA non-coding downstream 684407 803573 ~ 805155 (-)
G138371 NA non-coding downstream 687795 801214 ~ 801767 (-)
G138352 NA non-coding downstream 741093 747494 ~ 748469 (-)
G138324 NA non-coding downstream 1005959 483224 ~ 483603 (-)
G138559 NA non-coding upstream 415307 1933360 ~ 1933995 (-)
G138594 NA non-coding upstream 565845 2083898 ~ 2084097 (-)
G138678 NA non-coding upstream 984060 2502113 ~ 2502314 (-)
G138720 NA non-coding upstream 1173377 2691430 ~ 2691869 (-)
G138737 NA non-coding upstream 1189816 2707869 ~ 2708075 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 564164 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 667971 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 1300225 184121 ~ 189337 (-)
G138245 NA other downstream 1342722 144926 ~ 146840 (-)
G138741 NA other upstream 1200155 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 2410708 3928761 ~ 3953324 (-)
G138932 NA other upstream 2483597 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 5544420 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 5830758 7348811 ~ 7352821 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location