G138720


Basic Information

Item Value
gene id G138720
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 2691430 ~ 2691869 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174481
caaagactgatcctcagattggaagctgtaggcattcagggtaatgtaagtagatgattatgaactggttgatgtctaggaaacagagggtgtcgattagaggagttgcttctaactggagtgaggttgttagtggagttccacagggatcagtactagggcctttgcttttctaatctatattaatgatctggactctgggatagttagcaaacttgtcaaatttgcagatgatactaaaataggcagctcagcagatacaatctcggcagcacaggctattcagagggacttagataatattcagttgtgggccgacacctggcagatgaaattcaatgtggacaagtgcaaggtattacatgcaggtaacaaaaatgtccactataattacactatgggaggaatagaactagatgaagtaacgcatgagaaagacc

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function
GO:0140103 catalytic activity, acting on a glycoprotein molecular_function
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174481 True 440 lncRNA 0.42 1 2691430 2691869

Neighbor

gene id symbol gene type direction distance location
AMCG00002791 fam175b coding downstream 20357 2660906 ~ 2671073 (-)
AMCG00002790 zranb1 coding downstream 37020 2635291 ~ 2654410 (-)
AMCG00002785 edrf1,LOC104964479 coding downstream 199547 2480058 ~ 2491883 (-)
AMCG00002781 NA coding downstream 224735 2460051 ~ 2466695 (-)
AMCG00002783 NA coding downstream 241289 2445929 ~ 2450141 (-)
AMCG00002799 NA coding upstream 56243 2748112 ~ 2749307 (-)
AMCG00002797 NA coding upstream 58920 2750789 ~ 2751466 (-)
AMCG00002798 NA coding upstream 67005 2758874 ~ 2759867 (-)
AMCG00002802 gpr26,LOC107387797,LOC100699461 coding upstream 274125 2965994 ~ 2973796 (-)
AMCG00002807 bub3,LOC106575478 coding upstream 423992 3115861 ~ 3121097 (-)
G138678 NA non-coding downstream 189116 2502113 ~ 2502314 (-)
G138594 NA non-coding downstream 607333 2083898 ~ 2084097 (-)
G138559 NA non-coding downstream 757435 1933360 ~ 1933995 (-)
G138535 NA non-coding downstream 1173377 1489562 ~ 1518053 (-)
G138430 NA non-coding downstream 1793013 895012 ~ 898417 (-)
G138737 NA non-coding upstream 16000 2707869 ~ 2708075 (-)
G138738 NA non-coding upstream 22508 2714377 ~ 2714688 (-)
G138742 NA non-coding upstream 28543 2720412 ~ 2720704 (-)
G138799 NA non-coding upstream 368692 3060561 ~ 3113082 (-)
G138873 NA non-coding upstream 684379 3376248 ~ 3378038 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 1766032 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 1869839 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 2502093 184121 ~ 189337 (-)
G138245 NA other downstream 2544590 144926 ~ 146840 (-)
G138741 NA other upstream 26339 2718208 ~ 2719419 (-)
AMCG00002828 NA other upstream 1236892 3928761 ~ 3953324 (-)
G138932 NA other upstream 1309781 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 4370604 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 4656942 7348811 ~ 7352821 (-)

Expression


Co-expression Network