G138799


Basic Information

Item Value
gene id G138799
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 3060561 ~ 3113082 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174584
NNNGTTTTGTATATGTTGCATTCTTGGTGGATGTCGTCTTGTGGAAACCTCTGTTCTGTTGTTCTTGGTTTTCTACTCTTCATGCAGTTCTTTACTCCTTTGATATAGtacagatttaaacaaaataagcatcattattattcttactAATATTGTTTCCTTAAAACTAGTTTTATCTAGGAAGTCTTTCTTTCACTTTGTGTTTCATACAGTTcaattttagtgtttttctgcAACAAAATGGGCTTCAGTGACCCATGGTTATGGATTAGACTGAGTTCTGTGTGACTAAAATTTGGTGTTGCCCTCAGACTTTGTATTTAACTCGGTGGGTAGTGCCAACACTTTTTTATATAGACATGCAATAAATGGTGTTGTATGGTTTCACTTCTCTGCCACGCCTGCACGCCCTGTTTCTGTTGACTTGTACGTTCACACCAACAAAGCATCCGGAAAAAATTTGAAATGGCATGTAACGAACTTTCATacttaatgtaataaataaacatgttttttaaacaaaaaaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0030687 preribosome, large subunit precursor cellular_component

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
TU174584 True 542 lncRNA 0.33 2 3060561 3113082

Neighbor

gene id symbol gene type direction distance location
AMCG00002802 gpr26,LOC107387797,LOC100699461 coding downstream 86765 2965994 ~ 2973796 (-)
AMCG00002798 NA coding downstream 300694 2758874 ~ 2759867 (-)
AMCG00002797 NA coding downstream 309095 2750789 ~ 2751466 (-)
AMCG00002799 NA coding downstream 311254 2748112 ~ 2749307 (-)
AMCG00002791 fam175b coding downstream 389488 2660906 ~ 2671073 (-)
AMCG00002807 bub3,LOC106575478 coding upstream 2779 3115861 ~ 3121097 (-)
AMCG00002809 NA coding upstream 11842 3124924 ~ 3133886 (-)
AMCG00002808 NA coding upstream 25866 3138948 ~ 3140649 (-)
AMCG00002806 acadsb,LOC107746745,LOC102776774 coding upstream 49719 3162801 ~ 3168504 (-)
AMCG00002805 ikzf5,LOC107744272,LOC104955501,LOC107583523 coding upstream 56084 3169166 ~ 3180564 (-)
G138742 NA non-coding downstream 339857 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 345873 2714377 ~ 2714688 (-)
G138737 NA non-coding downstream 352486 2707869 ~ 2708075 (-)
G138720 NA non-coding downstream 368692 2691430 ~ 2691869 (-)
G138678 NA non-coding downstream 558247 2502113 ~ 2502314 (-)
G138873 NA non-coding upstream 263166 3376248 ~ 3378038 (-)
G138906 NA non-coding upstream 812085 3925167 ~ 3928618 (-)
G138948 NA non-coding upstream 962533 4075615 ~ 4076838 (-)
G139024 NA non-coding upstream 1342710 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 1352872 4465954 ~ 4466189 (-)
G138741 NA other downstream 341142 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 2135163 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 2238970 805760 ~ 821591 (-)
AMCG00002725 NA other downstream 2871224 184121 ~ 189337 (-)
G138245 NA other downstream 2913721 144926 ~ 146840 (-)
AMCG00002828 NA other upstream 815679 3928761 ~ 3953324 (-)
G138932 NA other upstream 888568 4001650 ~ 4002804 (-)
AMCG00002935 LOC106589936 other upstream 3949391 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 4235729 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 4818084 7931166 ~ 7938241 (-)

Expression


Co-expression Network