G138948


Basic Information

Item Value
gene id G138948
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 4075615 ~ 4076838 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU174779
GCTTAGATGAGTTTATTGACACATTAAATGTTGCCAAGTGAACCGAGATGTCCCCACACCCCCAATAACCCAGGCCCAGGTATTCGGCCATCTTGTGAACCTGCATAACTTCTTCTGCGGCTTTTGAAGGAAACCTGAGAGTTGTGAAACAGACTTGAGGAGGAATATAACAGCATTGCAGGAGAGAAGCCATTTGAACcaaatgaaatataaaagtatTCATAAATCACCCGACACACATTCAAGCCAAGTTTGAACGCTGGTGTGGTGAGAAAACGACCAATTCGGCCGCCAGAAGAGAGATTCAGCCGTGTCTGCGTGAATTCAACTGAAAGGCTCACGTCGATAATTTAAGTAGTAGTGCAAACCTGTCGTCAGGTTTCGGAGTCTGGAAAATAAACCTGATCATACAGCCAACAACAAAGTATGTCATTATGtttgttatattatatttttgctaTAGTAATCTACTACAAGTGTTCTTGCACTGCAGTAAACGGTCTTTGCTGGTGATCAGCATGTagcaaacatttatatttcaaataaactgcTACAACCAAATAGCCCTTCCTCTTTCCTCTTCCTATACCACAAGTTTATCAAAAAACAGATAGTTAGTTATTTGAATGagtaataatgttattaaacaatacaattaatgaaGGGGCTACACTAATATTTCTCCAGAAGATGATTAACTTCAATTGAAGGTGCAGTAACGGATTAAAGGCCATTCTCGGGAAAACCCTGGCATTGTCAGCAGTTACTTGGGCTCGAATAGACACAAAAATAGTTAAAGGTATAAGGAAATACACAATTGGCTGGTTTTATTTGGTCCTTCTCTTCtattacacacagaaaaaacacttcTATTCTTCAAGATAAAAAGTATTCCtcaaaataaaagtattcaAAGTGGACTTTGAAGTAACGCAGAGGGAGCAGGTTTGACATATATTGACTGCGGCTCCTAAAGCTCTCCACACAGGGCTGTTGGCCAATTTCCTGATGCAGTAATATTTAACCAAGGAGGGGTTTGCTATGTTTGCACATCGAGACGGCCGAGGCAAACGGGGAGCTGCATTTGATTGTTCACTTTTAAGGTCCCCGTGGAGAGATTATATGAGAGCCGTTTCAGGGAGCGCAGACTCGGTCTTGTCTACAATAGGAAAGATTTACAGTATCAGTCGAGGGATGTAAAGAGCTGAAGAGGCCAAATAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU174779 True 1224 lncRNA 0.40 1 4075615 4076838

Neighbor

gene id symbol gene type direction distance location
AMCG00002838 NA coding downstream 39735 4034370 ~ 4035880 (-)
AMCG00002836 NA coding downstream 45620 4022581 ~ 4029995 (-)
AMCG00002837 NA coding downstream 59034 4008655 ~ 4016581 (-)
AMCG00002830 NA coding downstream 94617 3980819 ~ 3980998 (-)
AMCG00002829 NA coding downstream 96580 3977656 ~ 3979035 (-)
AMCG00002841 nkx6.2,nkx6-2,LOC106576777,LOC106605004,LOC107745024 coding upstream 142338 4219176 ~ 4221061 (-)
AMCG00002844 NA coding upstream 205924 4282762 ~ 4298336 (-)
AMCG00002843 NA coding upstream 229488 4306326 ~ 4336926 (-)
AMCG00002851 NA coding upstream 505744 4582582 ~ 4600633 (-)
AMCG00002854 NA coding upstream 601869 4678707 ~ 4714306 (-)
G138906 NA non-coding downstream 146997 3925167 ~ 3928618 (-)
G138873 NA non-coding downstream 697577 3376248 ~ 3378038 (-)
G138799 NA non-coding downstream 962533 3060561 ~ 3113082 (-)
G138742 NA non-coding downstream 1354911 2720412 ~ 2720704 (-)
G138738 NA non-coding downstream 1360927 2714377 ~ 2714688 (-)
G139024 NA non-coding upstream 378954 4455792 ~ 4456002 (-)
G139025 NA non-coding upstream 389116 4465954 ~ 4466189 (-)
G139026 NA non-coding upstream 399626 4476464 ~ 4476663 (-)
G139027 LOC106576780,LOC103360772 non-coding upstream 418190 4495028 ~ 4495418 (-)
G139028 NA non-coding upstream 419324 4496162 ~ 4496362 (-)
G138932 NA other downstream 72811 4001650 ~ 4002804 (-)
AMCG00002828 NA other downstream 122291 3928761 ~ 3953324 (-)
G138741 NA other downstream 1356196 2718208 ~ 2719419 (-)
AMCG00002752 p4ha1,LOC107753313,LOC106578992 other downstream 3150217 920788 ~ 925398 (-)
AMCG00002743 psap other downstream 3254024 805760 ~ 821591 (-)
AMCG00002935 LOC106589936 other upstream 2985635 7062473 ~ 7066350 (-)
AMCG00002945 NA other upstream 3271973 7348811 ~ 7352821 (-)
AMCG00002970 cj104,anapc16 other upstream 3854328 7931166 ~ 7938241 (-)
G139933 LOC108443181 other upstream 4408523 8485361 ~ 8494596 (-)
G140006 NA other upstream 4770194 8847032 ~ 8847840 (-)

Expression


Co-expression Network