AMCG00003843 (lama2)


Basic Information

Item Value
gene id AMCG00003843
gene name lama2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21314074 ~ 21333224 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003843
GTTTTCCAAATCGCATATGTTATAATAAAGGCTGCCAATTCTCCACGACCTGGAAACTGGGTATTAGAGCGCTCTCTGGATGGTGTTAGCTTTAAACCCTGGCAGTATTTTGCAATTACTGACACAGAGTGCCTTACCCGCTTCAATATAGTCCCAAGGAGAGGACCGCCATCCTATACCAAAGACGATGAAGTAATATGCACCTCCTTTTATTCAAAGATCCATCCATTGGAGAATGGTGAGaTTCACACTTCTCTTATCAATGGAAGGCCCAGTGCGGATGACCCATCACCTGTCCTTCTGAACTTCACCTCTGCTCGCTACATTCGCCTTCAGTTTCAGCGGATAAGGACACTGAACGCAGATTTAATGACTCTAACTTACAATGATCCCAGGGATGTTGACCCAATTGTTACTAGAAGGTATTACTATTCAATCAAAGACATATCAGTTGGTGGAATGTGTATCTGTTACGGACACGCAAAAGCTTGTCCCTTGCACAGTGAGACcaagAAATTCAGCTGTGAATGTGAACATAACACCTGTGGAGAAAGCTGTGATCGATGTTGTCCTCTTTACAACCAAAGACCCTGGATGGCTGGGACCTTTCTAACACGGCACGTTTGTGAAAAATGCAATTGTCATGGGAAGTCAGAGGAATGCTCCTACAATCAAACTATTGCTGACAGGAAGCTGAGCTTGAACATCAATGGGGAGTATGAAGGTGGCGGCATCTGTCTGAACTGTGTCAACAACACTGCTGGGGTAAACTGTGAGACCTGCATTGATGGATACTTCAGACCACTAGGAGTTACCCCAGAAGAGCCTGATCCCTGTGTGCCATGCTTCTGTGATCCCCAGGGGTCTCTCCATACCACATGCATAAAAGATGAAACGAAAGCTGTAGGAGACTTGAATGCTGGTTCCTGCCATTGCAAGCCTGGCTACAATGGAAAAATATGTGACAGGTGTGCTTTTGGTTACACTGGCTATCCATTCTGCATTCGCTGCAACTGCAGCCTGGATGGGAGCCAGAATGAAAATCCTTGTGAAAAGCCATGCAAGTGCAAGGAAAATGTTGAAGGAGAGAACTGCGACCAGTGCAAGCCAGGGTTTTATAATCTCCAGAGAGAAAATATCAGAGGCTGTGAGAAGTGTTACTGCTCAGGCATTGCAAGTGAATGCACAGACTCCCATTGGACCTACAGTAAT

Function

symbol description
lama2 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within muscle attachment and myelination in peripheral nervous system. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane. Is expressed in adaxial cell; head; musculature system; nervous system; and otic vesicle. Used to study congenital merosin-deficient muscular dystrophy 1A and muscular dystrophy. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy; congenital merosin-deficient muscular dystrophy 1A; muscular dystrophy; and myopia. Orthologous to human LAMA2 (laminin subunit alpha 2).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: laminin subunit alpha-2, partial

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0016203 muscle attachment biological_process
GO:0030334 regulation of cell migration biological_process
GO:0005606 laminin-1 complex cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003843 True 1212 mRNA 0.46 8 21314074 21333224

Neighbor

gene id symbol gene type direction distance location
AMCG00003844 lama2,LOC107653134 coding upstream 17856 21288460 ~ 21296218 (+)
AMCG00003836 NA coding upstream 980538 20333123 ~ 20333536 (+)
AMCG00003835 NA coding upstream 1180719 20132773 ~ 20133355 (+)
AMCG00003833 NA coding upstream 1369057 19944010 ~ 19945017 (+)
AMCG00003832 NA coding upstream 1370237 19933174 ~ 19943837 (+)
AMCG00003845 NA coding downstream 15003 21348227 ~ 21438679 (+)
AMCG00003846 NA coding downstream 106890 21440114 ~ 21447121 (+)
AMCG00003847 NA coding downstream 158660 21491884 ~ 21535758 (+)
AMCG00003854 NA coding downstream 524266 21857490 ~ 21862799 (+)
AMCG00003855 NA coding downstream 617107 21950331 ~ 21958985 (+)
G3690 NA non-coding upstream 223820 21089595 ~ 21090254 (+)
G3670 NA non-coding upstream 386272 20925812 ~ 20927802 (+)
G3666 NA non-coding upstream 401086 20912142 ~ 20912988 (+)
G3661 NA non-coding upstream 405557 20903572 ~ 20908517 (+)
G3648 NA non-coding upstream 453780 20835737 ~ 20860294 (+)
G3754 NA non-coding downstream 262632 21595856 ~ 21598430 (+)
G3757 NA non-coding downstream 267408 21600632 ~ 21600860 (+)
G3767 NA non-coding downstream 399267 21732491 ~ 21732699 (+)
G3770 NA non-coding downstream 417303 21750527 ~ 21759799 (+)
G3798 NA non-coding downstream 584052 21917276 ~ 22016452 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 1916388 19271965 ~ 19397686 (+)
G3108 NA other upstream 3161760 18146660 ~ 18152314 (+)
AMCG00003779 ctsb,catb,LOC107381178 other upstream 3171441 18131919 ~ 18142633 (+)
G3047 NA other upstream 3630086 17681817 ~ 17683988 (+)
AMCG00003744 NA other upstream 4271480 17032570 ~ 17042594 (+)
G3751 NA other downstream 215977 21549201 ~ 21549533 (+)
G3771 NA other downstream 412626 21745850 ~ 21760630 (+)
AMCG00003853 NA other downstream 557299 21890523 ~ 21901865 (+)
G3799 med23 other downstream 589412 21922636 ~ 21923787 (+)
AMCG00003874 NA other downstream 1349792 22683016 ~ 22769227 (+)

Expression


Co-expression Network