AMCG00003856


Basic Information

Item Value
gene id AMCG00003856
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 21970496 ~ 21981590 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003856
GCTGAGCCCAGATCAGCTTCCCAGCAGTGTCAAGTGTGCATGTGCTCAGTTATTCATGAATTGCGCCTGAGAGACGCCTGGAAAACACACTGGCTGATGTGGCTGCACTTCTCTAGCGGGACGGGGCACCTTCGTATTTCGCTGAAGACCAGTTTTGTACAAAACGATGCGGAAATAATCCCGGATGACTTCAATgatctgtgtggagtttgcatgaaATGCTGGGACAAAGATTCCTAACTACTATATTCTTTGTAACACTACAGACTACAGACATTATCTATGGATCTGCTGTACCTCTGCCACGTGAAGTAGACTTCAAATCTTATAACCTGAGGAATGTTGTTGAATGGATGCCAGGAGACGGAGCTGACAATGAGACGCgatacacagtacagtatgcAATCTATGGAGAAGAGAATATGGGAGATGTGATGTGGAGGGTTAAGAAGAAATGTCAGAATATCTTGAATACGTGGTGTGACCTTTCGAACGAGACTAGCGACTTGGAAGAGAATTACTACGCAAGGGTTAAAGCGGTTTCTACTATTGGCTCTTCACAATGGGCGAACACGAAGAGGTTCAATCCAAAGTTAGACACCACCTTTGGACCCCCGCAGTTAAAAGTGACAGTACGCGACAAAACCATTAATATCAAGGTAAAGGGACCAATGAGATGGAGGAGTAATAAGAATGGAAAGGCAGTCTCCATGTTAAAATACTACCCTCAGATGACGTACAAAATATGTgtccaaaaatacaaaacaaataattcgtggAACTATCTTCTAGAGAACAACTCGATGGAATTGAGCATGTTGGAGTACAgtacacagtactgtgtgtttgCTAGGTCACATTTACCCTTAGCCTTAAAGAGTGACCCTTCTGAAGTGGTCTGTGTGTCCACTGCCAAAGatCCCTTTTTCGACTGGATGGTGTTTATTTTGACAGGATGTGTCTTGCCAATAACGATTGCCCTGTTTCTTCTCATTTTGGTCGGATGTCTAATATACCAGTATGTTTTTGGCAAAAAGCAGAAACAACCCCCAAATCTGttgttgCCACATCATCGTGAACATGAGGCAAAGTTTATGTTTTTTCCTCAGGACTTTACAGTGAATATTATCAACATTAATGGCATAAATAAGGGTGATTTTGATTCAGAATTCATCAGTCAGAAGCTCTTTGGGACTGCACCTGCCTGCTTTAACAAACTGAAAGAGGAGCTGCTGGCAGTGGGGGGTCCTGTGACCTACACATCCCAACTTCTAACAAGTCAAACAAGTAACAGACCCCACAATATATTGAATCCAGACATTCAAGAAAGGGCGACGGGAGTGTGTGACGATTTTGAATATGCAATGGTTCTGAAGGCGCAGGCATCCTTTGAGGAGAAAGAAAGTGTATCAGACAGGTGTACCTCCAATGATGTAGATCCCTCTGCAGTCAGCCACAACCAAGCATTAAACCAGGGGGCTGTGAAAGGCTCCGCACCACCAGAGGAAGCATTGCTGGGTGGACCAGAGCCAAACGCATACAAGCAGCAGGCCACTGAGGTGCGCTGTGAGGCAGACTCAGATGCAAGGAATATCTCGTGGACTTTCCCAGTGGTGGAAGCAGAAAAAGAGGAATCTATTGTTGTGGACTGGGACCCCGAGTCCTGTAGGTTACATATTCCACTTATTTCTGCATTTGAGAAAGAAATAGTTGAAAGGGAAGAGGAAGAGCCAGAATGTGACTGGTGGGAAATGACAGAGATGTTGCCAAAAGTCTATATAAGGCAGTCTTCAGAGGATTCTTGTGAAAGTGAAGACCACCTGAGAAGGCTAGTTAAAGACTGGGGCCTGCATGTCAACATGGAAGAATAAGATGTCCTGGGCTATTATAAGGGAAAGCATTTCCTCTGGGATATTGTTTGagattttgaatatttacatctgctaaattaaatgaaatctaACTTCTAGAAGTATAGGTAGGTATTTGTGTACCCAAAACctccaaaaatgaaaacattataatcTGTTCATAATCAtgagatatatttttgtatatgtatgtatatatttacaacattttacaatttaaagtaattacaCAAAGGAAGGAATTCAATCTGCTTGTGTTTCTGCTAAGACCCTTCAgggcctaataataataaaaaaatgccatAGTGGTACTAATTGTTCTTTTAATCTTGATTGATTCCTCAacataaatgtttcaaaagtGACTCCCAAGATGAATCATTGTAAATTTGTACTTCTATGGATTATGGCAATCTGCTTCTAACCATTTAAACTTTTGCTATGGGATTTGGAGAGTTAAAATCGTTAGAGAGATAGGATACTGCGCACGCTTCATTATTCAGTTGGTAGTATCTGATAAAATCAAACCTGTATTGAGGCAGATAAGCAAGTTTTAAAACAAGccaataattcaatatttcttAACTTGACCTTATAAAGTCCAGAAATGCACAATAACAAACTTACAAGAATGGAAAATGTAAGCTTGAGACGTTACATCAAAGGGCCTGATTTTTGGAGAGCAGATAAACATATTTTAGCAATCTCCATTGTTGAAAGAGCAGgcctttaaaatacatatactgcATCGTGGCCCAAAGGTTGTTATGAATAGTAGGCTACAGTTAGAGTAGATACAAATCTTCGCAAGTAAACTTTGCCAAATGTTTCCACTGATTTCttgcaaacaatattttatggaatatctgtaaatgtctgtttatatatgtatatttttataaacatcCACATATCATTTTACTTTGCTGAGCAGAACAATAACAAGGTATATGTGAAAACAATGAATTTGGaaaacatacatagatacagTATTAAACTTTCCACTCATTGCAAGtttgaatatttttgttgtgaagtattaatgaagaaaaagcaaTGCAGCATTGaatcatttttcactttttgttttatgaatgttGCTCTGTGGTTTACTGTGTTCTTCTGTGTGCCGATaatatgaagaaaacatttttgatttgagGTTAAAGTGGTCCATGTTTTGAGCATGCGTCTAAATATATCCTGTTTGGGCATTACTATACAAACCACATGGTTGGTGTACATCCTTAACAAATGATCAAGTCTatgctttttcttctttatatataCTTGGCTAATATTGGTTTGCACCTCACCAAGATTTAagtaattttatataaaaaataaaaataatgtgtcattttgcattctcattttttaattattattattattattattattattattattatatgaaatacAGTGTGTATGGCAGTGCTGCCCAAACCTAATCCTTGAGGGCCCCTCTCtaacaggttttataggtaacctTTAATTATCCACTTCTAAACACCtggaaccatttcaatgtgatcaattaagcaggtgatttgtgaaattaagttttataaagaaaatgaactaccCTATTCAACCCTCAATGACCAaaattcccttaattgaacaagttaattgcttaattgatcagtaACTTCCATGTGGTTCCAGTCTGTTGAAATTAGCGATTTAGGGTGACTGAGAAAACTTACTGGATAGGGGCTCACAGGACCATTTTGAGCACCACTGGTGTAATTGAAACTAATCAGTTATATACATGGTGTCATATTACAATTCTTTAGTTTGCAAAACACTTCAAggatttattcttgtttttcttcttctcatatGCTCAATGTATTGTAAAGGATattgtgtaaagaaaaaactaCAGTAGACAAATGAAATGTATACCATGTGCTTTCATGATTATTAtgagaaataaactaaaatgttaaagtgcttaattgtatgtttttttgaaaTACATCTACATCTAACCTATAGCTTTCAGGGCTTCTAACCCTGGCATTTACATCTg

Function

GO: NA

KEGG:

id description
K05136 IL20RA; interleukin 20 receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003856 True 3912 mRNA 0.38 7 21970496 21981590

Neighbor

gene id symbol gene type direction distance location
AMCG00003855 NA coding upstream 11511 21950331 ~ 21958985 (+)
AMCG00003854 NA coding upstream 107697 21857490 ~ 21862799 (+)
AMCG00003847 NA coding upstream 434738 21491884 ~ 21535758 (+)
AMCG00003846 NA coding upstream 523375 21440114 ~ 21447121 (+)
AMCG00003845 NA coding upstream 531817 21348227 ~ 21438679 (+)
AMCG00003861 NA coding downstream 119698 22101288 ~ 22106730 (+)
AMCG00003873 NA coding downstream 493497 22475087 ~ 22498055 (+)
AMCG00003871 NA coding downstream 532145 22513735 ~ 22523525 (+)
AMCG00003872 NA coding downstream 546769 22528359 ~ 22536293 (+)
AMCG00003876 NA coding downstream 842180 22823770 ~ 22829038 (+)
G3770 NA non-coding upstream 210697 21750527 ~ 21759799 (+)
G3767 NA non-coding upstream 237797 21732491 ~ 21732699 (+)
G3757 NA non-coding upstream 369636 21600632 ~ 21600860 (+)
G3754 NA non-coding upstream 372066 21595856 ~ 21598430 (+)
G3690 NA non-coding upstream 880242 21089595 ~ 21090254 (+)
G3845 NA non-coding downstream 95402 22076992 ~ 22077458 (+)
G3863 NA non-coding downstream 188750 22170340 ~ 22172105 (+)
G3871 NA non-coding downstream 201653 22183243 ~ 22184811 (+)
G3878 NA non-coding downstream 215724 22197314 ~ 22200678 (+)
G3884 NA non-coding downstream 243128 22224718 ~ 22225101 (+)
G3799 med23 other upstream 46709 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 68631 21890523 ~ 21901865 (+)
G3771 NA other upstream 209866 21745850 ~ 21760630 (+)
G3751 NA other upstream 420963 21549201 ~ 21549533 (+)
AMCG00003828 ctgf,ctgfa,moxd1,LOC106571301,LOC107683930,LOC106571350 other upstream 2572810 19271965 ~ 19397686 (+)
AMCG00003874 NA other downstream 701426 22683016 ~ 22769227 (+)
AMCG00003884 NA other downstream 1351011 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 1540236 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 1728439 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 1856999 23838589 ~ 24042885 (+)

Expression


Co-expression Network