AMCG00003877 (LOC107571660)


Basic Information

Item Value
gene id AMCG00003877
gene name LOC107571660
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 22871505 ~ 22882861 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003877
CGCTCGGATCGGTGCGGCTCGGCGGACGCGGCGAGCGGAGAGGAGGGTCGCTCTGCGTCAGACAGCCCGGCGGTCAATGAGAGCCACTGTGGGTCTGCATTGGGATCAGGCAACGCTACCAACAGCGCATCTATTTACGTGTGTGGAGACATTAGTGAAGGCAACCAGCAATCATGCCTAAGATGGCAGATCACAGGACCCACTTAGTCCTGGAGAATTACATCGGTGGGAAATTCGTGCCATGCTCCAGACATATAGACTCGTATGATCCCTCCACCGGAGAGGTGTACTGCAAAGTGCCCGACAGTGACAAGGAAGAGATTGAGGAAGCAGTGAAAGCAGCCAAAGAAGCCTTTCCAGCCTGGTCTTCTAAGAGCCCTGCGGAAAGGTCCCAGATACTCAACAAACTGGCCGACCTCATCGATGCCCATCTGGATGAGTTTGCGCAGGCAGAGTCTAGAGACCAAGGGAAAACTGTAACTTTTGCCCGGACAGTAGATATTCCAAGATCAGCTTATAACTTCCGCTTTTTTGGGTCTTCTATTCTTCATCACACGACGGAATGCAGTCAGATGGACCACATGGGCTGTTTGAACTATACCATTCGCAGTCCTGTGGGAGTAGCTGGCCTGATCAGTCCCTGGAATTTGCCCCTGTATTTGCTGACCTGGAAGATCGCTCCAGCTATCGCAGTTGGTAACACTGCTGTGGCGAAGCCCAGTGAGATGACATCTGTCACTGCCTGGATGATGTGCAAGCTTCTGGATGAAGCAGGGGTGGTGAACATAGTGTTTGGGACAGGACCACGTGCCGGGGCAGCCCTGGTGTCTCACCCCGAGGTGCCTCTCATCTCCTTCACCGGGAGCACGGCCACGGCCCAGCGCATCACCGAGGGCAGCGCCCCCTACTGCAAGAAGCTGTCCTTCGAGCTGGGGGGGAAGAATCCCGCCATCATCTTTCAGGATGCCAACCTGCAGGAGTGCATCCCCAACACGGGGGAGGTGTGTCTGTGCACCAGCAGGATTTTCGTGGAGAGGAGTATCTACTCTGACTTCCTGCAGAAGTTTGTGGAGGCCGCACAAAAGTGGAAAACTGGCGTTCCCACAGATTCCAGTGTTAACAACGGAGCACTTATCAGCAAAGAGCATTTAGAGAAGGTGAGGGGTTATGTGAAGCTGGCACAGGCAGAGGGAGGCAAGGTGCTGTGTGGGGAGGGAGTCACCTCCCTGGATCTCCCGGAGAGGAACAAGAGCGGCTACTTCATGCTGCCCACGGTCATCACCGACGTGTCGGACGAATCGCGCTGCATGCAGGAGGAGATCTTTGGCCCAGTGACCTGTGTGGTGCCGTTTGACAGCGAGGAGGAAGTCATCAGGAGAGCCAACAATGTGAAATATGGTTTGTCAGCTGTGGTGTGGTCCCGGGACGTGGGGCGAATCCACCGCGTGGCCAAGAAGCTGCAGGCCGGAACGGTGTGGACCAACTGCTGGCTAATCCGAGATCTCAATCTGCCCTTCGGGGGTATGAAGTGTTCTGGGATCGGCCGGGAAGGAGCCAAAGATTCCTACGACTTCTTTACGGAGGTCAAAACGGTCACTATTAAACATTGAGCATCAGGAGAgaggtctttaaaaaaaactaaaactatcaACTTAATTCACAGCCTTaccaataaatgtaattgaaatcaCAATAACTGCTTTCACCATACTTCGAGCAGGTCTTCCCACAGTACCTCAATGTAGGAGTGagagaaatataattaatttactgtttGGGTACTCTATGTGATGGCTCTTGTTCTTACTGGGGAAAAGGATGGTAATAATGACAGTTTTGTTCTGTGGATTTAACAACAATGGTTAAAAATGTCGGATGCATCGGCGCATATTTCTGAACGCTGCTCAATACACACCTCTGTTGGCCGGAGAAGACATTGATAGTGGGCTAGTTACATTTCTTACATTGGGTACAAAACTACTGTCCCACTGTACACTAGAATACAGTGTATTAGAACAAATAGCTTACAGATCACTTGCTATAAGGGAAGTGTAGGATGCTGTATAGAAAATGATCTTTGTAAAGACATGGGAAGGAAACTAATTTGCTCTTCTGGATTAGCATATGAAATAACCAGAATTGCACAGGCATATCCGTACTCCTGATGTAGTTACACCAAATTTTGTTGAATTGCAAATTCAACCGAGCAGTTTATGTAAACACGTCAGTTTCACGAAACAATAAATTGAACAATTAAGCAAACCAGCAGTAACAGTAGGCAACAGATTCTTATATGTTGTTTTCACAAGGTAAGCATACAGAAGTTTGTCCTCCCACAAGTATACCATTAGGTTTTTGAGAGGAAAGATTGGGTAAAGATGGAGTTGAGGGTAGACTTCTAATAAACccaagctttatttattttttcttctgtagtGAATAATACACTCTCAGttacatcttatttttttacaatgaaTTATTTGACTGAAATAGAAACTGCATGATATAACAGAAGCAGATttgcttatatatttaatattttatttttatatttcatgtttccTGCCATTGCAaagtttcatatattttaaactgagaTACACAACAGCAAGGCTAGACTAAAACTATGAACCACAGGcaaatcgcaaattacaaagtCTTACACCATCTCGTTTTCATTGATAAATAGTAGAatgtggcttctaacaataaattagaCCGATGAGTATGGATTTGTCCTTTGGCatttgcaggtaggtcaaagttttcatttggtctagCCCGAAGatgaaatatatgaaataagtGCAAAAATCCATATTGGAGAAAATATCCTGTGAACCAAAAAGAATTTTTAAGGGATTCTCTTCATCCCCTTTGGATGTCTATAACCAATCCAGTCCATGTTCATAGAAACAATTTCTGTGCAGTATTTGGAGGACCTGAATTACAATTCGAACAATCAGGAGAACTCATCCATACAAAAACCTGTTTGCCCATCTATGCAATCAAGTTTCTATGACAAAAGCTTTCACAAGTGTTGAGGCTAATCATTAAATTAAGTGGTTTATTATcttgttaaattataaatgattgTTATATAATTCAAATGCTCAATATTTAAATGCCTTTTCTGCTCTCTTCTTTTGCAGTGATGTTGAAATCAGTATGAAACTCATGTTAACAGAATTTCACTTGAATGTTAACAGGCACttcataaagaaatatattcTCAGTGccatttcatttcctttttccGAATGACAGTGTCTAGCTTCGCGGCTTTTGATTAAGAGCGCTGCTCTCCAAAACTTAGTtagtttacagaaaatgttattgaatcatgtttgttttaataaacacagacagGGTTGTGTGTCAATGTGGGCTGCATTAGTGATTTAGAAAGTGCAGCAGATCAAAATTGTGATATCGCTTCTGTAGCACAAGGTTATTCCACTAATGTAATTGTATCTACAGTAATGCTCTGCAAGGATACCCACTTTCTGTTACAGCACACAGCTCTCTCTGCAGACAATTGAAAGCCTTAATGTCATGTACCTAaaatggtggggaaaaaaatgtttgaataaatgTTTGTCTTTAATATTCGCATTATATGATAACGTTTATCATGAAgctaaaaaaatgaaatgaagttTGTGAAATATCTGTTAGTACAAAAGCAAGGTTACAAAGATATAATCAACTGCCCTATAATATGAActtaccaataaataaatacatataaatatataaatatatatatatatatatatatataagtatacaAGATTGTATTCTGTTGAATTAGAAAGGATTTTGTAAAAGGCTAATGTTCTGCTCCAAATTAAGCAATTACTGTTGTTTTACTGAGCTGATTAGTATTTTCAACAATAATTTCCCTAAGATTTTTATAACTTTTACTTTGTGGTAATTGAGgatgtaatttgtttcaatCTGTAATATTAAACTTCcatgattgtgtttcttttggCATTCATGtccaaaatgtaattcttgcacattgttaagaaaaatgtttactattttgtttctttcaaattaCTAAATGAAGTtgtctataaataaaaatattctatgtctgta

Function

NR:

description
PREDICTED: aldehyde dehydrogenase family 8 member A1-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0001889 liver development biological_process
GO:0005737 cytoplasm cellular_component
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K23234 ALDH8A1; aminomuconate-semialdehyde dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003877 True 4113 mRNA 0.41 7 22871505 22882861

Neighbor

gene id symbol gene type direction distance location
AMCG00003878 hbs1l,LOC107756395 coding upstream 11700 22844343 ~ 22859805 (+)
AMCG00003876 NA coding upstream 42467 22823770 ~ 22829038 (+)
AMCG00003872 NA coding upstream 335212 22528359 ~ 22536293 (+)
AMCG00003871 NA coding upstream 347980 22513735 ~ 22523525 (+)
AMCG00003873 NA coding upstream 373450 22475087 ~ 22498055 (+)
AMCG00003879 sgk1 coding downstream 158962 23041823 ~ 23046232 (+)
AMCG00003883 NA coding downstream 179099 23061960 ~ 23065930 (+)
AMCG00003882 NA coding downstream 190153 23073014 ~ 23081514 (+)
AMCG00003881 tcf21,LOC107701707,LOC107571274,LOC107756361,LOC107723756,LOC107671849,LOC105018007 coding downstream 252587 23135448 ~ 23137241 (+)
AMCG00003885 eya4 coding downstream 354485 23237346 ~ 23313877 (+)
G3991 NA non-coding upstream 2366 22868878 ~ 22869139 (+)
G3915 NA non-coding upstream 369676 22500917 ~ 22501829 (+)
G3914 NA non-coding upstream 370679 22500527 ~ 22500826 (+)
G3907 NA non-coding upstream 466651 22402604 ~ 22404854 (+)
G3886 NA non-coding upstream 631407 22236096 ~ 22240098 (+)
G4057 NA non-coding downstream 383409 23266270 ~ 23345005 (+)
G4059 NA non-coding downstream 432473 23315334 ~ 23322675 (+)
G4058 NA non-coding downstream 432767 23315628 ~ 23319122 (+)
G4071 NA non-coding downstream 479175 23362036 ~ 23362447 (+)
G4089 NA non-coding downstream 483330 23366191 ~ 23369996 (+)
AMCG00003874 NA other upstream 102278 22683016 ~ 22769227 (+)
G3799 med23 other upstream 947718 21922636 ~ 21923787 (+)
AMCG00003853 NA other upstream 969640 21890523 ~ 21901865 (+)
G3771 NA other upstream 1110875 21745850 ~ 21760630 (+)
G3751 NA other upstream 1321972 21549201 ~ 21549533 (+)
AMCG00003884 NA other downstream 449740 23332601 ~ 23338241 (+)
AMCG00003891 NA other downstream 638965 23521826 ~ 23533875 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other downstream 827168 23710029 ~ 23726144 (+)
AMCG00003902 NA other downstream 955728 23838589 ~ 24042885 (+)
AMCG00003910 zbtb2b other downstream 1235523 24118384 ~ 24129892 (+)

Expression


Co-expression Network