Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00003879 |
| gene name | sgk1 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 23041823 ~ 23046232 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| sgk1 | Predicted to enable potassium channel regulator activity and protein serine/threonine kinase activity. Acts upstream of or within inflammatory response. Predicted to be located in endoplasmic reticulum. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including blood vasculature; epidermal cell; epiphysis; pronephric duct; and ventral mesoderm. Human ortholog(s) of this gene implicated in hypertension. Orthologous to human SGK1 (serum/glucocorticoid regulated kinase 1). |
| description |
|---|
| PREDICTED: serine/threonine-protein kinase Sgk1 isoform X4 |
| id | name | namespace |
|---|---|---|
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00003879 | True | 1482 | mRNA | 0.44 | 6 | 23041823 | 23046232 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00003877 | LOC107571660 | coding | upstream | 158962 | 22871505 ~ 22882861 (+) |
| AMCG00003878 | hbs1l,LOC107756395 | coding | upstream | 182018 | 22844343 ~ 22859805 (+) |
| AMCG00003876 | NA | coding | upstream | 212785 | 22823770 ~ 22829038 (+) |
| AMCG00003872 | NA | coding | upstream | 505530 | 22528359 ~ 22536293 (+) |
| AMCG00003871 | NA | coding | upstream | 518298 | 22513735 ~ 22523525 (+) |
| AMCG00003883 | NA | coding | downstream | 15728 | 23061960 ~ 23065930 (+) |
| AMCG00003882 | NA | coding | downstream | 26782 | 23073014 ~ 23081514 (+) |
| AMCG00003881 | tcf21,LOC107701707,LOC107571274,LOC107756361,LOC107723756,LOC107671849,LOC105018007 | coding | downstream | 89216 | 23135448 ~ 23137241 (+) |
| AMCG00003885 | eya4 | coding | downstream | 191114 | 23237346 ~ 23313877 (+) |
| AMCG00003889 | NA | coding | downstream | 328061 | 23374293 ~ 23389309 (+) |
| G3991 | NA | non-coding | upstream | 172684 | 22868878 ~ 22869139 (+) |
| G3915 | NA | non-coding | upstream | 539994 | 22500917 ~ 22501829 (+) |
| G3914 | NA | non-coding | upstream | 540997 | 22500527 ~ 22500826 (+) |
| G3907 | NA | non-coding | upstream | 636969 | 22402604 ~ 22404854 (+) |
| G3886 | NA | non-coding | upstream | 801725 | 22236096 ~ 22240098 (+) |
| G4057 | NA | non-coding | downstream | 220038 | 23266270 ~ 23345005 (+) |
| G4059 | NA | non-coding | downstream | 269102 | 23315334 ~ 23322675 (+) |
| G4058 | NA | non-coding | downstream | 269396 | 23315628 ~ 23319122 (+) |
| G4071 | NA | non-coding | downstream | 315804 | 23362036 ~ 23362447 (+) |
| G4089 | NA | non-coding | downstream | 319959 | 23366191 ~ 23369996 (+) |
| AMCG00003874 | NA | other | upstream | 272596 | 22683016 ~ 22769227 (+) |
| G3799 | med23 | other | upstream | 1118036 | 21922636 ~ 21923787 (+) |
| AMCG00003853 | NA | other | upstream | 1139958 | 21890523 ~ 21901865 (+) |
| G3771 | NA | other | upstream | 1281193 | 21745850 ~ 21760630 (+) |
| G3751 | NA | other | upstream | 1492290 | 21549201 ~ 21549533 (+) |
| AMCG00003884 | NA | other | downstream | 286369 | 23332601 ~ 23338241 (+) |
| AMCG00003891 | NA | other | downstream | 475594 | 23521826 ~ 23533875 (+) |
| AMCG00003898 | LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 | other | downstream | 663797 | 23710029 ~ 23726144 (+) |
| AMCG00003902 | NA | other | downstream | 792357 | 23838589 ~ 24042885 (+) |
| AMCG00003910 | zbtb2b | other | downstream | 1072152 | 24118384 ~ 24129892 (+) |
