AMCG00003911


Basic Information

Item Value
gene id AMCG00003911
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 24310608 ~ 24319648 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003911
GAATGATGAGAGATCGACTGGAAGATCTACAGGAGGTGGTGTCAACTGAACTCCCAACACTGAACCAGAGCAGTGGCAATGTAGATGAAGGGGACTTGAGTCAGGAGGCTGCGCTGTTTGACACAGACCGAGCTCTGCAAAGTGTGTTTAAGGAGGCTCAGGATGTGCGAAACGAGATCCAGCTCATCAGGCAGGACATCAAGCGTCTGAAGGAGCAGAACGCCCGCATTCTCACCGATGTGTCGCGGATGACCTACATCAAGCGAGACTCCAATGCCATCGCCGCTGACATCAAGACCCGGGGAGAAGGAGTCCTGCACCGGCTCCAGAAGATGGAAGAGCAATGCAAGGAGCTGGAGGTCAAATACGGTGTAACCTCGACCGTGGTGCGTATCGCAAGGACCCAGTATGTTTCCCTGAGCAACAGCTTTCGTGACGCCATGTTCGAATACAACGATACGGAGATGACCCTCCGAGAGAACTGCAAGGCTCACATCCAGAGGCAGATGGAGATTGTCGGCAAGGAGGTCACCGGCGAAGAGATCGAGGAAATGCTTGAAAACAATAAGTGGAATGTGTTCACTGAGAACGTGCTGGTGGAGGGCAAGACAGCCCGCTCCGCCTTAAATGAGATCGAGTGCCGCCACCAGGAGCTGGTGGATCTGGAGAACCGCATCAAGAGTGTCCATGAGCTTTTCCTAGATGTGGCCATGATTGCGGAGGACCAGGGCCCCATGATGAACACCATTGAAGCCAACATCCACAAAACTGACATGTCTCTGGGGCAGGTGCTGACGAAGCTCAAcgctgccaagaaatacaataGGACGATGAAAGACCGACTCGGTGATCTGCAGGTGGTGACCCAGGACTCATCCCACGAGGAGAGGGAGGATGACCCTTCGGCTGTGGAAGATGTAGAGATGGAGCAGCAGGCCGTGGTGTTTCAAGATGAACACACCATGGATGACGTCTTTAAAGAGGCGCAGGCGATTCGGCAAGAGATCAGTCACCTTAAGGTGGATGTCAAACGCCTGGGCAAGCAGAACACGCGTTTCCTCACGTCTGTGCGGCGGATCAGCAGTATCAAGCGCGACTCCAATGCCATCGCCCGGGACATCAAGGCCAGGGGAGAAGGCATCTACAAGCGGCTGCAGAAGATGCAGACCCTCAGCAAGGACCTAGAGACCGAGCACGGCCTCAACGCCGCCTTGGTGCGCATGGTGCGGTCCCAGTACATCTCTCTCACGAACAGCTTTCAGGACGCCATGTTTGAGTACAATGAGGCTGAGATGACCCAGCGGGAGAATTGCAAGACCCGCATCCagagacaggtagagatcaTGGGCAAGGAGGTCACTGGGGATCAGATTGAGGAGATGATCGAGACCGGCAAGTGGAATGTGTTTTCTGAGAATCTGATGACCGAAGGGAAAACGTCCCGCTCGGCGCTCAACGAAATAGAGAACCGCCACAAGGAACTGCTGGATTTGGAGAGCCGAATCCGTGAGATCCACAACCTGTTTTTGCAGATGGCCCTGCTGGTGGAGGAGCAGGGCTGCATGCTGGACAACATCGAAGCCAATGTGAGCTTGACTCAGGAATATGTAGGGAAGGCTACATATCAGATTAAACAAGCCgtgaaatacaagaaaaagaaCCCCTGCAAACAGCTCTTCTGTGGCTGTTTCCCCTGCTGC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0016020 membrane cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08487 STX11; syntaxin 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003911 True 1700 mRNA 0.54 2 24310608 24319648

Neighbor

gene id symbol gene type direction distance location
AMCG00003917 NA coding upstream 28165 24281916 ~ 24282443 (+)
AMCG00003903 rmnd1 coding upstream 196032 24104219 ~ 24114576 (+)
AMCG00003897 dynlt1,dylt1 coding upstream 570146 23735802 ~ 23740462 (+)
AMCG00003890 NA coding upstream 790021 23459840 ~ 23520587 (+)
AMCG00003894 phip,LOC107708770 coding upstream 863189 23445822 ~ 23447419 (+)
AMCG00003913 NA coding downstream 46551 24366199 ~ 24423841 (+)
AMCG00003914 NA coding downstream 145403 24465051 ~ 24498556 (+)
AMCG00003912 utrn coding downstream 182342 24501990 ~ 24540373 (+)
AMCG00003915 NA coding downstream 232492 24552140 ~ 24554116 (+)
AMCG00003918 LOC107091581,LOC106928558 coding downstream 449309 24768957 ~ 24776655 (+)
G4165 NA non-coding upstream 529520 23780780 ~ 23781088 (+)
G4164 NA non-coding upstream 535665 23774640 ~ 23774943 (+)
G4163 tulp4,LOC102289060,LOC104963868,LOC107597860,LOC102779174 non-coding upstream 536556 23773740 ~ 23774052 (+)
G4162 NA non-coding upstream 542849 23767408 ~ 23767759 (+)
G4089 NA non-coding upstream 940612 23366191 ~ 23369996 (+)
G4351 NA non-coding downstream 290626 24610274 ~ 24610562 (+)
G4354 NA non-coding downstream 327861 24647509 ~ 24647755 (+)
G4358 epm2a non-coding downstream 338259 24657907 ~ 24662781 (+)
G4359 epm2a non-coding downstream 344291 24663939 ~ 24664183 (+)
G4362 NA non-coding downstream 365368 24685016 ~ 24687137 (+)
AMCG00003910 zbtb2b other upstream 180716 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 267723 23838589 ~ 24042885 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other upstream 584464 23710029 ~ 23726144 (+)
AMCG00003891 NA other upstream 776733 23521826 ~ 23533875 (+)
AMCG00003884 NA other upstream 972367 23332601 ~ 23338241 (+)
G4360 NA other downstream 363752 24683400 ~ 24683920 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other downstream 1465525 25785173 ~ 25795795 (+)
AMCG00003948 sesn1,LOC102782344 other downstream 1761635 26081283 ~ 26085122 (+)
AMCG00003962 NA other downstream 2263019 26582667 ~ 26586892 (+)
G4831 NA other downstream 3742715 28062363 ~ 28103211 (+)

Expression


Co-expression Network