AMCG00003930 (wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835)


Basic Information

Item Value
gene id AMCG00003930
gene name wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25785173 ~ 25795795 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003930
ATGTTTCTGTTGCAGCTGAAGAACATAGATCGTCCGCAGGAGCCTGAGAAAGTGCCCCGGGCCCCTCATGATCGCCGTAAAGAGTGGCAGAAGCTCGCCCTGGGCCAGGAGCTGGCTGAGGATGATGCTGAAGACGTCCATAAGCACAAGGATGTGGCCAACGGCTCGGCAACATACTGTGATACAAGgcACCCTGTTTACATGGACCATATAGACGGACCGTTTTCTCTGGCAGCCCTTCCATACAGTCAGATGAATGAGCTGCTGAACAGAACCAGTGATCGAATGTATGTCCGGCCTCACGAgccccccccgcctcccccacTGCACAGCGTAGGAGACCTCAAGGCGCCATCCATTATCAGctccagctctggaTTGACAGACAGCCGTCCTCAGTCCCCGGCCAGGACCCCAGTGTTCCTCAACCCCAccgcacccccaccccctccaccccctcttCCCCCTCCTCCGCCGCCCTTACCCTCCACACTCCCCGGCTCGGGCCTGCGCTCCACTCCTCCTCCCCCCGTGCCGCCCCCGCCTCCAATGCAGCCCCCCGCCATCCCGCCTCCGCCTGCGCCTCTCCAGATTGCCCCCGGCGTCCTGCACCCTGCCCCGCCACCCATCGCCCCGCCCCTGGCCCAGCCCGCCTCCCCGGCCCGTCTCTCACAGGCTCTGGAGAAGGGCCCTCCCCCCCAGACAGAGGGCCTGATcctgcccccgcccccgccGCCCCCTCCCCTGCCCCTGCCCGGCCTCCGGACCTCCTCCCCCTGCCCCACGCCCCCTCCTCCCGGCCCTCCCCCTGTGCCTTCCTTCCTGTCAGGTACTGTCCCCTCCTTCCCCACACACGCAGGGCATGGTGCCGATGTCAAGCGGCACCCCTCAAATCTGCCCGTCATCAGCGACGCCAGGAGTGTCCTTCTGGAAGCAATACGTAAAGGTATTCAGCTCCGCAAAGTGGAAGAGCAGCGGGAACAGGAGGCGAAGCACGAGCGCGTGGGTAACGACGTGGCCACCATCCTGTCGCGACGCATCGCCGTGGAGTACAGCGACTCCGAGGACGACTCCGAGTTCGATGAGGTCGACTGGCTCGAGTGACAAACCCTGTGCAGAAAGTCcgagttctttatttaatttttattttttattttttgttctttttaaatttttgttttgtttttttccaccaaATAAGTGCTGTTCTCATTTGTGGTACTCGTTTTCagggtaaaagaaaaaaaaaatcactgttcTTTTCCAAGTGTTTTTTGCAACTGTTTTGTACTCATTTTCTACACGAcatcttaatttgttttccgaTGATCTGATAATCTCCTGgtgtacagttttaaaaaaggaagacGAAAATAAAAATTACCACCACGTTTTTCTTCCAGTGACTTTTCCAGAGAAGAGATCGCAGATGCTCTTTGTTTTGGAACTTGCCGTTGAGTATTAAGTCGGAGGTGGTCACCTTCTGGCTGACAGCAGAACTGAAGAactactgtaatttattttttattttttaatacaaccGGTTTCTAAAGGCTAATTGTTTCTGGTGCAAGCCAATGTTAAGGATTTACGACTCCTGAATATATAGCATGAGCAGCTAACCTACATAATTGCATTGACTGGGTGTTTCATTGTATGCGCACTTTGTGAGTACTGACTTGaagaaaccatttttaaactacaagacCCAAGGCAGCTGTTTATGACGTTACTACACTACATGTACAGAGCACGGTGAGCCTTACCCACTCTCTGATAACCGGACTCATGCCATTGCAGTCAGAATTGGCACCCTGCTTAGACGCAAACTGAAGAAggatgtttttactttaatctgCCTGTACTCCAAATAAAtagtcattatttttcagatactatgccttattatttttttggattattttttaaatttacttatttttattattattttttggttcatgaatgtactgtgctgtactactTTGCCTGCTCTCTTAAGGACTAGCTGTTTCTATGTGAAAAGACCTGATTTCAATACTGTATACTGTGTAACTTATGTAACTGATTTCCGTAACAGTTTGCTTGAATTAATAAAAGCTAATGTTATGTTTAAAGTA
>TU5497
CAGGTACTGTCCCCTCCTTCCCCACACACGCAGGGCATGGTGCCGATGTCAAGCGGCACCCCTCAAATCTGCCCGTCATCAGCGACGCCAGGAGTGTCCTTCTGGAAGCAATACGTAAAGGTATTCAGCTCCGCAAAGTGGAAGAGCAGCGGGAACAGGAGGCGAAGCACGAGCGCGTGGGTAACGACGTGGCCACCATCCTGTCGCGACGCATCGCCGTGGAGTACAGCGACTCCGAGGACGACTCCGAGTTCGATGAGGTCGACTGGCTCGAGTGACAAACCCTGTGCAGAAAGTCcgagttctttatttaatttttattttttattttttgttctttttaaatttttgttttgtttttttccaccaaATAAGTGCTGTTCTCATTTGTGGTACTCGTTTTCagggtaaaagaaaaaaaaaatcactgttcTTTTCCAAGTGTTTTTTGCAACTGTTTTGTACTCATTTTCTACACGAcatcttaatttgttttccgaTGATCTGATAATCTCCTGgtgtacagttttaaaaaaggaagacGAAAATAAAAATTACCACCACGTTTTTCTTCCAGTGACTTTTCCAGAGAAGAGATCGCAGATGCTCTTTGTTTTGGAACTTGCCGTTGAGTATTAAGTCGGAGGTGGTCACCTTCTGGCTGACAGCAGAACTGAAGAactactgtaatttattttttattttttaatacaaccGGTTTCTAAAGGCTAATTGTTTCTGGTGCAAGCCAATGTTAAGGATTTACGACTCCTGAATATATAGCATGAGCAGCTAACCTACATAATTGCATTGACTGGGTGTTTCATTGTATGCGCACTTTGTGAGTACTGACTTGaagaaaccatttttaaactacaagacCCAAGGCAGCTGTTTATGACGTTACTACACTACATGTACAGAGCACGGTGAGCCTTACCCACTCTCTGATAACCGGACTCATGCCATTGCAGTCAGAATTGGCACCCTGCTTAGACGCAAACTGAAGAAggatgtttttactttaatctgCCTGTACTCCAAATAAAtagtcattatttttcagatactatgccttattatttttttggattattttttaaatttacttatttttattattattttttggttcatgaatgtactgtgctgtactactTTGCCTGCTCTCTTAAGGACTAGCTGTTTCTATGTGAAAAGACCTGATTTCAATACTGTATACTGTGTAACTTATGTAACTGATTTCCGTAACAGTTTGCTTGAATTAATAAAAGCTAATGTTATGTTTAA

Function

symbol description
wasf1 Predicted to enable Arp2/3 complex binding activity and protein kinase A regulatory subunit binding activity. Predicted to be involved in actin cytoskeleton organization and positive regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Predicted to be active in lamellipodium. Orthologous to human WASF1 (WASP family member 1).

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein family member 1-like, partial

GO:

id name namespace
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003930 True 2120 mRNA 0.50 4 25785173 25795795
TU5497 False 1290 TUCP 0.40 2 25794052 25795791

Neighbor

gene id symbol gene type direction distance location
AMCG00003931 wasf1,LOC106571806,LOC107739187 coding upstream 17385 25763983 ~ 25767788 (+)
AMCG00003933 wasf1,LOC106607981 coding upstream 37732 25735715 ~ 25747441 (+)
AMCG00003934 NA coding upstream 139872 25632524 ~ 25645301 (+)
AMCG00003935 ust,LOC106607986 coding upstream 236551 25518913 ~ 25548622 (+)
AMCG00003932 NA coding upstream 325222 25425817 ~ 25459951 (+)
AMCG00003939 NA coding downstream 108590 25904385 ~ 25915025 (+)
AMCG00003938 NA coding downstream 119625 25915420 ~ 25927139 (+)
AMCG00003937 NA coding downstream 137232 25933027 ~ 25938329 (+)
AMCG00003943 NA coding downstream 144087 25939882 ~ 25943047 (+)
AMCG00003944 NA coding downstream 150848 25946643 ~ 25965249 (+)
G4482 NA non-coding upstream 174877 25610078 ~ 25610296 (+)
G4452 NA non-coding upstream 231084 25481598 ~ 25554089 (+)
G4362 NA non-coding upstream 1098036 24685016 ~ 24687137 (+)
G4359 epm2a non-coding upstream 1120990 24663939 ~ 24664183 (+)
G4358 epm2a non-coding upstream 1122392 24657907 ~ 24662781 (+)
G4512 fig4b,fig4 non-coding downstream 18496 25814291 ~ 25888313 (+)
G4526 NA non-coding downstream 133672 25929467 ~ 25929680 (+)
G4536 NA non-coding downstream 148348 25944143 ~ 25944352 (+)
G4589 NA non-coding downstream 429698 26225493 ~ 26227500 (+)
G4590 NA non-coding downstream 433133 26228928 ~ 26229252 (+)
G4360 NA other upstream 1101253 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 1655281 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 1742288 23838589 ~ 24042885 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other upstream 2059029 23710029 ~ 23726144 (+)
AMCG00003891 NA other upstream 2251298 23521826 ~ 23533875 (+)
AMCG00003948 sesn1,LOC102782344 other downstream 285488 26081283 ~ 26085122 (+)
AMCG00003962 NA other downstream 786872 26582667 ~ 26586892 (+)
G4831 NA other downstream 2266568 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 2584016 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 2658624 28454419 ~ 28465646 (+)

Expression


Co-expression Network