AMCG00003944


Basic Information

Item Value
gene id AMCG00003944
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 25946643 ~ 25965249 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003944
CGGGGGGTTGTGACGCGTTATCTCAGGCATGCAATAGGTTAAATAGTGCAGGCAGGcctgcaggcaggcaggcaggcaacTCCGGCACCTATCTCTCCTCCCTCTGCAATGAGTCAGGGAAGTGCCACATGACCTGTATAGCAGGAAGTACAGCCACAGAAAACCCGTATACAGCACAGGCAGATTGTAGCTGCTTTCTCTCTCACGCACACTCTTCTTTCCCACCACTATATCGTTCAATTCAAGTATTTGTGTTTGTCGGGTAAGTTTAAGACATTGCAGAATGTACTGGAGACTGCTGTGTGTAACATTCATCCTGGCTGTCCTGCGCAGTACAACAGCACAAGGGAAGATAGGACACCACGAGAAGCAAATCAAAAACGGTAATGGCACTTTCTTAAATGCCTCCTGTGTCAACGACACTTTTATCCCTACAAAAGAGTGCCTGCTTACGAATGAATCGGCTTGTGCGGCTCCAGCGAATACAAGTACACCAGTCACCCCCACCACGTCACACAATGCCACCATCACTCCTACAAAttctactacaactactacagCAGTTTCTCCCACTGCAGTCCCTCACAAGAAGTCCTCTTTCGACGCGGCCAGTTTCATCGGGGGCATCGTACTGGTGTTGGGACTGCAGGCCGTCATCTTCTTCCTGTACAAGTTCTGCAAATCCAAGGATAGGAACTACCACACCCTCTAAGATTATCCTCCCTAGACAATAGAACAGCGGTCACTCCAGGCCATGGGCTGACATTGCCCTTCCCAGAGACCCCAGTCCTTTCAAACAGTGTTTCCAggcagtgtctgtgttttccAGCTCAGCACGAGCAGCCTGTGAGTCCTGCATTACCTCTGAAGTAGCTCATAATGCAACCATGTTGACACCATTGATTACTAGCTAGCACTGTTCTTAGTGAGGCTTTTAGACATCTGTACCAACAAAGGTAATGCTAGAGTTATGGTGTTACAGGCTGCTTACTTTTCTGTTGCTTTAGGAACACTGTTtgaaactggatttttttttttattattcttttattaataatgattaagCCCCCCTTTAAAAGTATGGAAGATACAGCATTGCTTTTCAGGCTTCTGCTAcagtaaagaaaattaatatgcAACTTTTGGGGGGGAGCTAACTGACAAATTTGAAATTCGAAGGTGAAAAGCAATACTTTACTTTCACTCTCGCTAAAAGAGAGAACTATTCCAATTAAAAGCAACATCATTACAAGATGAATAGGCCTTTATGTATGCTAACTGAAAAAGACCAGACAAAGACAGTTGAGGTCATCTCTTGCGGTCTTGGAAGTGGATGCATTCCAACGTAAGTAAAGTAAATCTAAGGTGTGCAGGGCTGAGTTTTTTTGGGGTGTGTTTGCGCATGCTGTTTATCTGCCAGAGAAGGAGATATTGTGGTAATGGTGAAGAACAATCCATGGAAAAACTCAGTTTTGCAATGAAGCAtggctgcatttttttttttctcatttgttttatcGTAGAATGGTACTGGCCTGCAATCGTGATCTCTGTGCCGCACCGTGAAGATCGATCCGCTTTACAGTACAAATTAAGTAACTGAATTCTCAAATGCACGGATTAATTGTTGGTAGTTGTTAATTATCTTTTTGAGGAGAATATTTGGGGGTTTTCTGTGAATGTGTGCCGAGAACTAAATTTTAGCTTTAGAGGAGTATgtctgaaacaattaaaaaagaaaaagtcataCACCTTTTCAACATTGATGGCAGTGGAGTGGAGAAAAGTGCCTTATGAATGTGCCAATCAGGCGAGTAATACATGGAAGACCCCCTGACCCCTGATTTAAACTGTATCCCTGTGATTCTGTGTTTAGGGGTGGGAGGGCAGGTTATCATTGTCAATactattcttattattcttatcaAATGCAGTGGTGCTGCcagcttgacttttttttttttaaacatacaataacatatttatttcagtagtgCCCAAGTACTCTGCACAGAAAGGGGATTTTACCCAGACGTATTAATATCCCCTCcccaattaataataatctgcaaCTTTTCTTTTGTAAGTTCCTTGTTTGAAAAATGAAGCGTCACTAATGGAGTGTCTATATTTGATATTCCAGCTTTTCCCCATCATGTTGACAGTTATTCTTCAGTTATACAACTGAACATGGTTCCTATGTTGACAAATACAGAAAGCAGCCTTTTTCTTCCTCAAAACGTTCTTGATTTTTATGTAACCTTTAAAATTGGACTTCTAGAAATGAATGTAGGGGGAtccctttttaatttgaagaatCACTTGCTGAAATGAATGTTAGGTACGCAGCACATACATTTAGAATAGTGGTTTGAAGCCTGAGTTTTGTTAAGTCGAATGCTTTCTGTTCACTAGATATTGCTGATTTTCGATccttttttatgttgtgtttcaaaCCGTCTCAGAATGGAAATTTGACAAATTTAATCGTTAATTAGATAAATTTAGGATATGTTGAATAGGTTGTCAATAGTTTGCACCTATGCACTCCTTATAGTATTGAGACAATCTGCTCAGGTTTTCTGCAAATGAGCACGTTAATGTTTTTGAATTGTAATTATGTGAGTATTCAGTTGCAGATGTTCTCTGGACTCCTACCTATACATTTAGTAAACcagtttgttttacaaaaaattatgatgtacattaaaatacaaaaaaaataaactggttaTGGCTAAGCATGAGATTTGATGCATTGAACTGACCAAGCTTTGCTTTTTTCtcccaaaaatgtattatgtaggccttttttttttttttttttaatcgctTTACTTGTAATGCAGATTTATTTGCcagataataaaaatgttaaaaatgttttaaaaattatgaaaactgAATGCATGGCCCGTGTCTGCCAATATTGACCAAATGTTTGTTCATTGTAGACCCTTGTCTAAAGACCTTTAAAATGACTCGAGCAATATGAGAGCAGCATTAGGCTAAGTCCAAAGAGTTTGAATCTTCATGGCAAGATACTATAGCACAAAACGTGATCTAGGAAAATGCTGGCTTAGCTGCTCCCGTGTGTGTCTGTTGCCCTCTGTGTTTTGTAGATTCCTGTTGAGAATGGTTTGGCTCATGGTTGTAGAAGTAGTTCCATCATAGATATTGCAGATGCTTCACAAGTGTGTCAAAATGCTCTTGTAATTATGCCAAGTACATACCAGATATTGCCTTGTTTCCATTTGTCCTTGATAAGGTTTTAGAAACGCCAGCTCTGGAGAAAGTGTATCTTGTGATTTCTGAGTAATCAGGACCAGTCTTGTCCACCAACATTACACAATTATCGGTGTAGCCCTAGTACCATTTTCTTTGGAGGAATCCTGCAAGTTTTGTAATCggtgtggaaaatgtatttgcctTCACTGGCGGGCACTCCAGAACATATGTGCCCCATGGCTGTTATTAGTTAAGACTTCCATAGTAGCAGGCCAAAAGAAAGTATTAATTTCTGCAGAATTCATGTACTGGGTGGTGCCAATGTATTCTCTATACCTGTAAGCTTAAGGTAGAATGTCACACTGCATGGAACAAAGCCCTTATTGTAAAGTGCCTTAATTAGCTCTGCTTTTAGTGGCTAAAAAAAGAcatccatcttttttttttaaatcaataatctcaagtttgtataaaatgtttggCTTGCAATGCACTGCACCTGTTCTTTCAGTGTCTGAAGGAGCCCAGCAAGCATGGTAGTTGGATGGGTTATTCCCATAGGTCAAAGTGTTGAAACTTAATTTCTAAAATTGTTGTGCGTGTGtttcttgccttttttttttttttttttggtggtcaTATCAAGCTAAAGGGTATTCATTGGTTGAATTGCCTGCTGTGCCCTGAACCCCACACTTGTCCAGATGTAGACACTTGCTGTTGCATATGTAGCCACAAAGCCTGCCTTAATAAAGTTTGATGCTTTTTAAGTATACTTTTTTTAGGTGTCTTGTTTTTCTCACGTGCAAAGTTTAAGTTgtgaaaaattaataaaatttgGGAATTTGAACAAAA

Function

GO: NA

KEGG:

id description
K06546 CD164, MGC24; CD164 antigen

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003944 True 4083 mRNA 0.39 5 25946643 25965249

Neighbor

gene id symbol gene type direction distance location
AMCG00003943 NA coding upstream 3596 25939882 ~ 25943047 (+)
AMCG00003937 NA coding upstream 8314 25933027 ~ 25938329 (+)
AMCG00003938 NA coding upstream 19504 25915420 ~ 25927139 (+)
AMCG00003939 NA coding upstream 31618 25904385 ~ 25915025 (+)
AMCG00003931 wasf1,LOC106571806,LOC107739187 coding upstream 178855 25763983 ~ 25767788 (+)
AMCG00003947 NA coding downstream 54295 26019544 ~ 26019825 (+)
AMCG00003954 NA coding downstream 292177 26257426 ~ 26257668 (+)
AMCG00003949 snx3 coding downstream 307170 26272419 ~ 26279485 (+)
AMCG00003956 NA coding downstream 354518 26319767 ~ 26328027 (+)
AMCG00003955 NA coding downstream 369384 26334633 ~ 26339261 (+)
G4536 NA non-coding upstream 2291 25944143 ~ 25944352 (+)
G4526 NA non-coding upstream 16963 25929467 ~ 25929680 (+)
G4512 fig4b,fig4 non-coding upstream 58330 25814291 ~ 25888313 (+)
G4482 NA non-coding upstream 336347 25610078 ~ 25610296 (+)
G4452 NA non-coding upstream 392554 25481598 ~ 25554089 (+)
G4589 NA non-coding downstream 260244 26225493 ~ 26227500 (+)
G4590 NA non-coding downstream 263679 26228928 ~ 26229252 (+)
G4592 NA non-coding downstream 278413 26243662 ~ 26244054 (+)
G4593 NA non-coding downstream 278998 26244247 ~ 26244637 (+)
G4594 NA non-coding downstream 290540 26255789 ~ 26256106 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 150848 25785173 ~ 25795795 (+)
G4360 NA other upstream 1262723 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 1816751 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 1903758 23838589 ~ 24042885 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other upstream 2220499 23710029 ~ 23726144 (+)
AMCG00003948 sesn1,LOC102782344 other downstream 116034 26081283 ~ 26085122 (+)
AMCG00003962 NA other downstream 617418 26582667 ~ 26586892 (+)
G4831 NA other downstream 2097114 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 2414562 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 2489170 28454419 ~ 28465646 (+)

Expression


Co-expression Network