AMCG00003948 (sesn1,LOC102782344)


Basic Information

Item Value
gene id AMCG00003948
gene name sesn1,LOC102782344
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26081283 ~ 26085122 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003948
ATGGGGTTCCATCCTCAGTATCTGGAGAGCTTCCTGAGGACACAGCACTACCTGCTGCAGATGGACGGCCCTCTTCCTCTGCACTATCGGCACTACATTGGGATCATGGCTGCAGCCAGGCCTCAGTGTTCCTATCTGGTAAACCTGCATGTGAATGACTTCCTTCAAGTGGGAGGGGACCCCAAGTGGCTGAACGGCCTGGAAGGTGCCCCACGCAAGCTGCAGCATCTGAGAGAGCTGAACAAGATCTTGGCCCACAGACCATGGCTGGTCACAAAAGCACACATTGAGCAACTCCTGAAGGCTGAGGAATACAGTTGGTCCCTGGCGGAGCTCATTCACGCAGTGGTGCTGCTCACTCACTACCACTCCCTGGCCTCCTTCACTTTCGGATGTGGGATCAGTCCTGAGATCCACTGTGAGGGGGGGCACACCTTCCGGCCGCCCTCTGTCAGCAGCTACTGTGTCTGTGACATCGCCAATGGCAATGGAGCGCAGGAGGAGATGCTGGGGAACCATCTGGTGACTGAAACCTCTTGTGAAGTGGAAGCCCTGATGGAGAAGATGAAGCAGCTGCAGGAGTGTAGGGATGAGGAGGAGGCCAGTCAGGAGGAGATGGCCACCCGCTTCGAGAGGGAGAAGACCGAGAGCATGCTGGTGGTGACTGCAGAGGATGATGAGATGGTGCCAGCTCGAGATGTGTCCCGGCACTTTGAGGACACCAGTTATGGCTACAAGGACTTCTCTAGGCGTGGAGAGCACGTGCCTACATTTCGTGTCCAGgATTACAGTTGGGAGGACCATGGCTACTCCTTGGTGAATCGTCTTTATCCAGACGTGGGGCAGCTGCTGGATGAGAAATTCCAGATTGCGTACAACTTGACCTACAACACCATGGCCATGCACAAAGATGTGGACACCTCCATGCTGAGGCGTGCGATCTGGAACTACATCCACTGCATGTATGACGATTATGACTATGGAGAAATTAACCAGCTGTTGGATCGCAGCTTTAAGGTCTATATCAAGACTGTGGTGTGCAGTCCAGAGAAGACCACAAAGAGAATGTATGACAGCTTCTGGAGGCAGTTTCAGCACTCTGAGAAGGTACATGTGAATTTGCTTCTAATGGAAGCTCGAATGCAGGCGGAACTGCTCTATGCTCTGAGAGCCATTACTCGCTACATGACATGA
>TU5581
aGGTATGACGATTATGACTATGGAGAAATTAACCAGCTGTTGGATCGCAGCTTTAAGGTCTATATCAAGACTGTGGTGTGCAGTCCAGAGAAGACCACAAAGAGAATGTATGACAGCTTCTGGAGGCAGTTTCAGCACTCTGAGAAGGTACATGTGAATTTGCTTCTAATGGAAGCTCGAATGCAGGCGGAACTGCTCTATGCTCTGAGAGCCATTACTCGCTACATGACATGAAGTGCTTTGTTCTGTTCCTTGTGTGGacatttcaaaggaaactgAATGTTGAATAGATCTTCATGATGGATGTGGACAGTCCTCTGAATGGAGAGCTGACTAACTGGCTGCTGTGAATCCGTTGTGCCATAAACGTGCGGTGGTGCATCTATGCTAATACTTGGCTGTGAGGCAATCCGAAGATGAGGATAGAAGACTGTGAAGAAGAAGCCAAACTTCAGTATTCCATTGCATCCGCTTTAATGTCGCTGAACGACGTGAAACATTTTAACAGCGTTCGCAGCGGTGCACTGAGCTGCACACATTATTTagatttcattgttttgtattaaagctGACATTTGAAATGACTGGAGGTAAACGAAATGAAACTAAACCATTTCCTGATGAAGTTGTTGGGCTGTATAATGTGTGCCTGAAACCAGTAGATGTTGAAAGTGGCGTTGCTGCTCTTCACACCAGTGGGATCTTTTAACCAGCTGGTTGTTCGTGTAAGCTAAAACAAGGGTGATGGAGAAACACGGTGACTCTCTGAGCCCACCTGTGTTCCCCCCTTGACACCTCTACACATTGTGAATTGGTATTTCCTTtaacactttgcatttgacACCATCACCCGTCGAGGCACTTTTTAAGGATAAGACTGTTTTTACTGCTGTATTCTAATTGTTTTGAGGAAGCTTTGTATTTTCTCCATCAGTCAATATCACAGTCTTCCCTAGAGAAGTGCGCCTGTAATTCCCCCTCCAAGTCTTCCATAGACTGTCACCTAACAAAATCATTTTGCATTGGAATTTGAATACCTCTTAAGTGCTCTTTTTGGGCAGAAATACTGTTTTGCACCTGTTCTCCTTTTATGCTTCTGCTTGTCTGTGTCAGTGGCGGAGCTGAAAGGAGGGTGGCTTTATTTTTGACTGCACTGCTGCAGTCTCTGAGATGCTAGTTCTTACTGTTGATTTGAACTTAACCATTTAGCAGCTTTTATGGTGAAGTGGAGAATCCCATTTTGTGTACTTAAAACGTAAAGTACTTGATCAAGAAACAGAAACCGAATTGGACATATTACAACTGTGGGTTGAGGGGTACACTTTCAAAATGCCTGTAATTATAAATCGCAAGGTATTTCCTAAACCTTTGACGCGTATGAATATCAGTGTTACTTGCattttcatgaaaaataaaatgttttcataatagTAAGCTGAAGGACCATTGGTGTTGTACAACAGACTTTCA

Function

symbol description
sesn1 Predicted to enable leucine binding activity and oxidoreductase activity, acting on peroxide as acceptor. Acts upstream of or within determination of left/right symmetry. Predicted to be located in cytoplasm and nucleus. Is expressed in several structures, including anterior axial hypoblast; central nervous system; mesoderm; presumptive paraxial mesoderm; and pronephros. Orthologous to human SESN1 (sestrin 1).

NR:

description
PREDICTED: sestrin-1 isoform X4

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003948 False 1194 mRNA 0.53 8 26081283 26083886
TU5581 True 1470 lncRNA 0.41 2 26083329 26085122

Neighbor

gene id symbol gene type direction distance location
AMCG00003947 NA coding upstream 61458 26019544 ~ 26019825 (+)
AMCG00003944 NA coding upstream 116034 25946643 ~ 25965249 (+)
AMCG00003943 NA coding upstream 138236 25939882 ~ 25943047 (+)
AMCG00003937 NA coding upstream 142954 25933027 ~ 25938329 (+)
AMCG00003938 NA coding upstream 154144 25915420 ~ 25927139 (+)
AMCG00003954 NA coding downstream 172304 26257426 ~ 26257668 (+)
AMCG00003949 snx3 coding downstream 187297 26272419 ~ 26279485 (+)
AMCG00003956 NA coding downstream 234645 26319767 ~ 26328027 (+)
AMCG00003955 NA coding downstream 249511 26334633 ~ 26339261 (+)
AMCG00003958 sec63 coding downstream 254726 26339848 ~ 26365099 (+)
G4536 NA non-coding upstream 136931 25944143 ~ 25944352 (+)
G4526 NA non-coding upstream 151603 25929467 ~ 25929680 (+)
G4512 fig4b,fig4 non-coding upstream 192970 25814291 ~ 25888313 (+)
G4482 NA non-coding upstream 470987 25610078 ~ 25610296 (+)
G4452 NA non-coding upstream 527194 25481598 ~ 25554089 (+)
G4589 NA non-coding downstream 140371 26225493 ~ 26227500 (+)
G4590 NA non-coding downstream 143806 26228928 ~ 26229252 (+)
G4592 NA non-coding downstream 158540 26243662 ~ 26244054 (+)
G4593 NA non-coding downstream 159125 26244247 ~ 26244637 (+)
G4594 NA non-coding downstream 170667 26255789 ~ 26256106 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 285488 25785173 ~ 25795795 (+)
G4360 NA other upstream 1397363 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 1951391 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 2038398 23838589 ~ 24042885 (+)
AMCG00003898 LOC105418227,LOC108432361,LOC107549029,LOC107708771,LOC107571650,LOC107756347,LOC107656533 other upstream 2355139 23710029 ~ 23726144 (+)
AMCG00003962 NA other downstream 497545 26582667 ~ 26586892 (+)
G4831 NA other downstream 1977241 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 2294689 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 2369297 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 2483062 28568184 ~ 28585674 (+)

Expression


Co-expression Network