AMCG00003957 (scml4)


Basic Information

Item Value
gene id AMCG00003957
gene name scml4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 26395626 ~ 26424123 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003957
caggTCCAATGAGTATTCCTGCAGCATCAGCGCAGAAAGCAGACAACAGTGAAATGCAATCACCTGCCATGAGCCCTTCATTCATTCCTGGGCAGAGAGGGAAGATACCAGGCAGGAAGCGGGGCCGACCACCCGTCCGCTCCACTGTCTCAAAAATGGATTTTCAGAACCGATACTCTGAGTCCCTCTCTCCCCTTAAAGTCCCCAAGAAGAGGGGGCGCAAGCCAGGATTTAAGCTCAAGTCTCGGATCGTGATGACCCCTCTGGCCATCTCCCCTCCCAGCAGCACGCCTGAGCCGGACATGAGCTCCATCCCTCAGGACGCTGCCACCGTCCCTCACTCCGCCACCCCACAAGTGCTCACAGtttgcatttatataaacaaGCAAGCCAACACAGGTCCTAATCTTGACAGGAAAAAAGTGCAACAGCTTCCAGATCATTTTGGGCCCGACAGACCGTCTGTTGTGTTGCAGCAAGCGGTCCAAGCCTGCATTGACTGTGCTTTCCAGCAGAAAGCCGTATTCTCACTGCTCACTCAAGGTTATGGCGGTGAGAAAATATCAGccaCATTTGATGGGAAGCAGCACCTTCTGAGTCTGCCTGTAGTGAACAGTATTGGCTATGTGCTGCGGTTCCTAAAGAAGTTGTGCCGTAGTTTGCACTGCGAAAATCTCTTCAGCGATCAGCCTTTCATACAGCACAGCGCCGCCTCCTACCACTCTGAGAAGTACTTTGAGGGAAATTCACACTCCACTGAGACTTCAATGCCTGAGGATTACCTAGTTGACCCAATAGATTCAAAGCGGTACTCTGTGGACCCCAGTGACTCGGCATTCAACTCCATGAACTCCCCATACCCGGCCAAGTCCTCCTATGGCTATCGCTCGTGCCAGCAGTTTCCCGGAGGCTCGGCCCCCATGGGCCTGTGCAGGCAGACGTCCAGCCCCAGCGCCTTCCAGGAAGGAAACAGAAGTGCCTACAGTCCATCTCCAGAGACGCAAGAGTCCAAGCCTCCTCCCAGCAAGGACCCGTCCACCTGGACAGTGGAAGATGTGGTCTGGTTTGTCAAAGACGCAGACCCTCATGCTCTGGGACCACATGTAGAAGTCTTCAGGAAACATGAGATCGATGGCTATGCTTTACTGCTCCTGAAGAGCGACATGATCATGAAATACCTGGGACTGAAGCTGGGGCCGGCCTTGAAGCTCTGTTACCACATCGACAAACTAAAACAGGCCAAATTCTGAAGGCTCGGCACCAAACCTTCGATCCATTGCATTAAATGGCGGGGAAATGCAAGTATTtctgacacaaaagaaaaacaaacaacaaacaaacattttccttATGATTTACAGAACAGTTCAATTTTAAGTTAGGTCACGCCTGTGGCCACTTAAAGACGTTCAGCTAAAGCAGGTGTCTGGAGAGATGGGATCTGTGTGCTGCGCAGTGCTGTGCGGCAGGTACTTTAGTACTCTGACTGAGTGGGATTTTGTGTTAAGGATCCAGCAGATGCCACTGGTGAACATACCGAGAAAATCCCACAGTTGTCAAAAAGGTTCATCATAATTACTATAAGGAGACACTGGGTTCAAATCTTAATTCGATTTTGTCTGTGTTGATATGCTGGCCAGTTTAATTTCCCAGTTTAAGAGGCCTAATTTGAAAGGCACTCAAACAACAGCAATTTAAGCATTGTCTCTGTAATCATTCTTCCTGCCCAGTGAGCCCAGACTGCAGACAGTGTGCAGAGGTGTGTGAGGACCCGCTCAGACCCATCTGCCAGTACTGCCACGGGTAGAAGTGTGGCAACACTCAGGTGTCTGTTGACAGCAAGTGCAAGGAAACTGcagctctgtctgtctccacAGAGCTGAGTAACATGAAATTGGGATCTAAAGGATGCATTTCACCCTAAAGGCCATACAGGACACTGTTTGTGTGTAAGTAGGATGATTTACAGAGGACTTCCTCCCTGgtctgaaggaaaacaaaaacaccattgGTATCTGCCAGAGAAGTAACGCAATACAATCTcccacacaaaaaaatgaataataattgaagCAAAGAGGTGCTGTGCATTTTCATACACTTGTTTGATTCTGAACAGATAATGCTGGATTCTTTTATTTTGAGTCTagatctgtctctctctcaccttgtATGTAATGAGACCGTTAGTTCCATTGTTGGGAGAGAAAGCTTCATTAACCAATCTAGCACATAATTCAAGCCTCTTCAGTACTGGCCTCACTATGAAGGTGATCTGAGTTCCAGTACCAGAGACGAGGGATGACGTGATCAATTGTGAGCCTGATTGCAATTCACAGCCCAGTCCATCTTGTTGACTGGGGGATTTTAAAATCACACTTATTTCTGTACAGTTCAAAAGAAACTTAGCCACCAGACATTAGGCAAACAATTATCCTGTCATTACCATTAAAgcatagtttgtttttttagtttaatttgtagGAAAGGTAtatagtttttagattttttaatcatatattcaaatttgtaggattttaaataaatcgGTATAAGATAAACTCATTCAGGAAGATTACAAAgcaaacaacttttttttttttcctaccaCAATCCAACTCCGCATTTACTTGAAGTGTAAGTTGTGAtgggaaaaacattttataagccagactttttattttaatttaatttgtttgtttttttaaagctgtatacaatatatatgggcttggtgttttgtatgtatctgattaaattgcaattgtaaatactgtcattttaaatgaagtaaGTAATAATGTATGTTGAAAAATAAGTCATGGTACTGTCATATATGTTTTGGCAGATGTAACatgattttgttattattttttaaacatcagtATATTTAGAAATGACAATATAATATGGGCAATCTAAAAAAAGTTGTAAACATAGCTGTTGAATTGCTTTGCTGTCATAGACGTTCAGCTTAAGCCATAGTGGCTATTTCTAAACTGTATCTGCTTTGATGTTCAGAAGATCCCCATTAATCATTTCAGAGAAAGTATTTCTGTTTGGGTTCATTTAACactataattttaatacaatgGCCATCCGTAATGAAGGGTTTCAGCTGAAGTTTGAAGcctgtgtttttctattttcttccaTCTAGCTTTAAAAGCAGAGGCACATAGTGCTACACACTTGAGTCCACAAAATGCTTCGGCATTTTAGTTGAAATACCACTGTTACTGTACTTGATTTAAAGCCTCTAAATACAAATGAAGCTAGTCTATCTGGAAGCATTCAGCTTTGATTGTGTGTGACtatgtattgcatttgtgtattttttattaatatgtgtATCTGAAAGCTGCTTTTTATGATAATAGGTATAAGCCAAGTCAAGAAAAATCAAGCAAAAGTTTATTATTGAGATTCTGAGAAGCTTTGGTATCGACACAATCTACCAGGAAGGCTGCTACGTGAATCATTTCATGTTGGTgctaactactactactactaatttttcttcttcttttaatttgctttaagtGTTGTGAAAATCTATGTGATtgagtcaaaaacaaaaaatgacctTTTTAGCTTGGTGAGTTTTAAACTGACAAACAGAGCATTGTAGCCTACGAACACAGCGTTACATTTAATCTGGACACCTCatctgtatattatatacaatcAAGCATCAGTTCATTCTTCAGTCAGTGAGATGAACAAATGAACCGCCTCTGATTTGATTTATGAACCAGACAGCAGGGTTCAAGCCCTGCAGTAAAGCAACTCATTTTCAAAGATAACAGGATAATGGAAGTTTGAATTTCCATTTGAACTTAGGCCAAATTAGTTTTCTTCTAGACAACTAGACAGCCTTGTATTATCATTGAAGTCCTAATGAAAACAATTTACTAAATgaccagtattattattattattattattattattattattataactcccttattattgttattataagtattatttatCCTTAGTCGCCTCAGCTGTGATCACAGTCGTTTTATAGAGATAGATTGGATGGGTTAGGGCCACCCAGACAGTGGTGTATTTACCGAATTACTCTATTAATCTGtgctgacattttacatttacaggaGTAGAAGTGTTATTTTGAGCTTAGCTAAGCCATTTATTGACTCTCcttcacaatgtgttttttttcaatttgttagGCCGTCCATTCTTGAGGTTTAAGTAACTCCCGTGGAAAAAATGGTGACGTGTTTTTACTCAAGCTTAGTTAGGAGTTTTATTCTGCACATGAGCACCTGCAGTTCAGATCTTTTCATTGTCTGGCGTTTCTTGGACTCCTGTtaaaactgatttgattttggGTGCCTTAGATGCATCTGAGAGTCATTATTGTACAGACCGTTCAAGTGCAGAGGTCTGTATTGTGCTGCTGTGTAATGGGTATCCTGATCAATATTAGTTGACTGCTTCAACACTGTGTTTTATCACATGCTTACGTTAGATCATTTGTTCAGTGTAAAGCTgatattgaattatatttattaaatactcTAGCCAATTAGAGGTACTTACATATTCATACCTCTGAAGTATTTACAAGTCCCTCTCTGCTGTCTAAAATATTCAGACCTCGGTCACATCACGCATTACTCTTACAAAAGGGTTTGGACTAGCCTGCCATCAGATTCGTATGATGGTTATTAAcgtatcttttttttcttttacacaatTGGTTCTTTGTAGATTTGCATggcctgttttaaaaaaaaaaagtgtcttgtgaaatttaaatgagaaaaaaagcatatatttttttaaatgatggatGAGATTGGATAATCACTTCATAGCATTAAAGCATGAGATTTAAAGTTGggaatgttaaagaaaaaactaaaaagcctGTGTGGTTAGAATTGATTATACCATTTGTAATGATCAGAGGCAGCTATAGACACACTTAGGCCACAAAAGAATGTCTTTTCCTGAGCAACTGAATGGTTCgttttttattaattagtttgaaagatttttttttatcattttttatttttttacattatgtatttttaagaaatggCAGCTTTATGAAGGGTATTATTGTTGGTAAACTCTGGCAATCTGTTTATTTCCTTCCCATTGTCTTAGGCAGGGCCTGCATGCATTTCTGTTCAGTCAAACTGGATATTATCTCCATGCAGTGTGTGTAGGGCATGGGCTAATTAAACAAGGGGTCCTGAGCTCTCTATCAAACAGATAATTCAGGATTAGCTTTCTGGTGAAACTGAGGTTTTCATAAATCAGTGTGAGACAAATATATGGGTGTGTGCTGTCTGCATGTGCtgaaactgtttatttaaagagcCGATCATAAAGAGAAGGTACTCAACCGGGTGTTTGTGATGGTCTTTTGTTAAGACAGGCGCAGTGTGCCAGTTGCACTGCTTCTCTTCTCAATACCACCCTCCCACAAATTCACATCTGCACTGCTCCTATGAACATTCACAGTCCTAGGGTACAGAACTGTCTGCTTGCAGATACAAATGTGGTGGCCACGGATCCTCTGAGGTGAATTCCCAGGGCCGACTGCTCACTTTGCTGTACCTGCATCCCTCCAGTGTGGCGTCGGTGATGACAGTGTGACCCCAAAGCTCTGCCAAAACCTTCTTGTGAGGTATTGTAAGGGAGAGCCCATCAGACTGAGAAACAACCATGAAGGTGTAAAAGCATGAGACCAGAGCAGTTCAAGATATTCTCCATCTATACCGGGTcacccctgacacacacacacacacacacacactttgttgtagcttttcatttttaattcatagaCATAGTGGAAAGTGTGGTGGATGCAGACAGCCTTGTATTTGTGAAGCATTCATCGTTACACCACACTAACAACAGACATGGCTTAGAGGTGAGTTGTAGTAACGAATGGACTGATGGCTAATTCTGATTCATATTATCAAATTAacactaaaaacaaatcagagtTTAGTCTTCTCTGGGTAAAATCTCACAGATCCTTTCATAATTAATCCTGAAACCGTATTACTAgcgtattaaaaacaaaagtaaattttGTGTATTGcccattatttcattttatttttataaagtacAAAGTTGTATTTCTCATGCAGAGGCTAGTTACGCTCAATGCAGTCTCCTGCCCAGTAGGGGTTTGGCTTAGCAGTTTGCCATTATTAGTAGCAGCACTTAAAAAGCAGATATACAGTACGCCAGGTAgcaattgtttttctcttctttgagagcaatatttgttttttgccaagTGAAGTGATTGacttttttacttcttttttttttttttttttcggctGCTTGAGGCTCTGGTTTTGTAAAGACTGTTAATCTCCTATCCCATGCCTTTTTTCATTTACGAAGCACATTGTTCTGTAAAGTGGTGTTTGGTGATGTACGTTTCAAAAGGTTGCACAACATGTAAACTGCTTCAATAAAAAGAatcttaatgta

Function

symbol description
scml4 Predicted to enable chromatin binding activity and histone binding activity. Acts upstream of or within definitive hemopoiesis. Predicted to be active in nucleus. Is expressed in brain; olfactory epithelium; and retina. Orthologous to human SCML4 (Scm polycomb group protein like 4).

NR:

description
PREDICTED: sex comb on midleg-like protein 4

GO: NA

KEGG:

id description
K11466 SCML4; sex comb on midleg-like protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003957 True 6507 mRNA 0.40 7 26395626 26424123

Neighbor

gene id symbol gene type direction distance location
AMCG00003958 sec63 coding upstream 30527 26339848 ~ 26365099 (+)
AMCG00003955 NA coding upstream 56365 26334633 ~ 26339261 (+)
AMCG00003956 NA coding upstream 67599 26319767 ~ 26328027 (+)
AMCG00003949 snx3 coding upstream 116141 26272419 ~ 26279485 (+)
AMCG00003954 NA coding upstream 137958 26257426 ~ 26257668 (+)
AMCG00003959 NA coding downstream 108026 26532149 ~ 26561121 (+)
AMCG00003963 NA coding downstream 143607 26567730 ~ 26578204 (+)
AMCG00003964 NA coding downstream 210354 26634477 ~ 26650391 (+)
AMCG00003969 NA coding downstream 297767 26721890 ~ 26754415 (+)
AMCG00003971 NA coding downstream 454579 26878702 ~ 26879865 (+)
G4595 NA non-coding upstream 138601 26256781 ~ 26257025 (+)
G4594 NA non-coding upstream 139520 26255789 ~ 26256106 (+)
G4593 NA non-coding upstream 150989 26244247 ~ 26244637 (+)
G4592 NA non-coding upstream 151572 26243662 ~ 26244054 (+)
G4590 NA non-coding upstream 166374 26228928 ~ 26229252 (+)
G4694 NA non-coding downstream 227162 26651285 ~ 26651567 (+)
G4787 NA non-coding downstream 857881 27282004 ~ 27282241 (+)
G4804 NA non-coding downstream 1159448 27583571 ~ 27584034 (+)
G4806 NA non-coding downstream 1297337 27721460 ~ 27776442 (+)
G4808 NA non-coding downstream 1353167 27777290 ~ 27777659 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 310504 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 599831 25785173 ~ 25795795 (+)
G4360 NA other upstream 1711706 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 2265734 24118384 ~ 24129892 (+)
AMCG00003902 NA other upstream 2352741 23838589 ~ 24042885 (+)
AMCG00003962 NA other downstream 158544 26582667 ~ 26586892 (+)
G4831 NA other downstream 1638240 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 1955688 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 2030296 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 2144061 28568184 ~ 28585674 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000325_08759821_08778452 SCML4 coding CI01000325 null 8759821 ~ 8779242 (+)