AMCG00003973 (grik2,LOC103365520,LOC107103501,LOC105917636)


Basic Information

Item Value
gene id AMCG00003973
gene name grik2,LOC103365520,LOC107103501,LOC105917636
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 27492506 ~ 27506149 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003973
aaaactaaaatatcaaCTTACGACAAGATGTGGGAATTTATGAGCAGCCGAAGACATTCTGTACTTGTCAAAAACAATGAGGAAGGTATCCAGCGCGTGCTCACCTCTGATTATGCCTTCTTAATGGAATCAACAACCATTGAGTTTGTTACACAGCGGAACTGTAACCTGACACAGATTGGGGGCCTTATAGATTCCAAGGCGTATGGAGTCGGCACTCCCATGGGCTCTCCATACCGGGATAAGATCACCATTGCGATTCTGCAATTGCAGGAGGAAGGCAAGCTCCACATGATGAAGGAGAAGTGGTGGCGGGGAAATGGCTGCCCCGAAGAGGAGAGTAAAGAAGCCAGTGCTCTGGGGGTGCAGAATATCGGAGGCATCTTCATCGTGCTGGCAGCGGGCCTCGTGCTCTCAGTGTTTGTGGCAGTGGGAGAGTTCTTGTATAAAtccaaacaaaatgcacaacTTGAAAAgAGGTCCTTCTGTAGTGCCATGGTGGATGAGCTAAGGGTGTCTCTGAAGTGTCAGCGTCGTCTCAAACACAAGCCCCAGGCCCCTGTCATGGTAAAAACAGAAGAAGTTATCaacatgcacacatttaatgACAGAAGATTGCCAGGCAAGGAGACCATGGCATAA

Function

symbol description
grik2 Is expressed in Bergmann glial cell; cerebellum; granule cell; hindbrain; and optic tectum. Human ortholog(s) of this gene implicated in Huntington's disease and autosomal recessive non-syndromic intellectual disability. Orthologous to human GRIK2 (glutamate ionotropic receptor kainate type subunit 2).

NR:

description
PREDICTED: glutamate receptor ionotropic, kainate 2, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003973 True 642 mRNA 0.48 3 27492506 27506149

Neighbor

gene id symbol gene type direction distance location
AMCG00003972 grik2,LOC107667969 coding upstream 42612 27430090 ~ 27449894 (+)
AMCG00003977 grik2,LOC101466412,LOC102291713,LOC102207761,LOC107740554 coding upstream 110504 27380559 ~ 27382002 (+)
AMCG00003971 NA coding upstream 612641 26878702 ~ 26879865 (+)
AMCG00003969 NA coding upstream 738091 26721890 ~ 26754415 (+)
AMCG00003964 NA coding upstream 842115 26634477 ~ 26650391 (+)
AMCG00003980 NA coding downstream 556406 28062555 ~ 28094602 (+)
AMCG00003982 NA coding downstream 591911 28098060 ~ 28098326 (+)
AMCG00003983 NA coding downstream 753547 28259696 ~ 28275388 (+)
AMCG00003985 NA coding downstream 848366 28354515 ~ 28369974 (+)
AMCG00003989 NA coding downstream 866997 28373146 ~ 28379173 (+)
G4787 NA non-coding upstream 210265 27282004 ~ 27282241 (+)
G4694 NA non-coding upstream 840939 26651285 ~ 26651567 (+)
G4595 NA non-coding upstream 1235481 26256781 ~ 26257025 (+)
G4594 NA non-coding upstream 1236400 26255789 ~ 26256106 (+)
G4593 NA non-coding upstream 1247869 26244247 ~ 26244637 (+)
G4804 NA non-coding downstream 77422 27583571 ~ 27584034 (+)
G4806 NA non-coding downstream 215311 27721460 ~ 27776442 (+)
G4808 NA non-coding downstream 271141 27777290 ~ 27777659 (+)
G4837 NA non-coding downstream 598061 28104210 ~ 28105707 (+)
G4917 NA non-coding downstream 960768 28466917 ~ 28468944 (+)
AMCG00003962 NA other upstream 905614 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 1407384 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 1696711 25785173 ~ 25795795 (+)
G4360 NA other upstream 2808586 24683400 ~ 24683920 (+)
AMCG00003910 zbtb2b other upstream 3362614 24118384 ~ 24129892 (+)
G4831 NA other downstream 556214 28062363 ~ 28103211 (+)
AMCG00003988 NA other downstream 873662 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 948270 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 1062035 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 1134025 28640174 ~ 28683981 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000244_00049224_00062275 GRIK1B, GRIK1, GRIK2 coding CI01000244 null 49210 ~ 62275 (-)