AMCG00003983


Basic Information

Item Value
gene id AMCG00003983
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28259696 ~ 28275388 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003983
ctcagtgttttcagtttcagagaGAGGCCAATAGAGTTTGCAGGATGTCCTTCCGTAGCCAGTGAAGGGTCAGATGGGAAGGAGAGATCGATAATGCCTCTAGAACCACAGACAgCTGCCTCACAGCATAGCTCGGATATTTTAACTGCAGAGGGATCGCCACAGACTGGAGAGTTCACCATGAAAATGGATATGGAGGATGCTGACATGACAAAGTGGACAGAGGCAGAATTTGAGGAGAAATGCACATATATCGTCAAGGACCATCTGTGGGAAGCCAGCCCGGACAGTGGAGACCTGACTCAGGCTGAAGCCTCGCTGCCACGGAACTTGCTTTTCAAACATGTACCTAATACCAAAGAGgTTATTGGTGTCGCAAGCAAGGAATACATCCCAAAAGGAACGCGTTTCGGACCCCTTGTTGGCGAGATGTACACGACTGAAACTGTTCCCAAGAATGCAAACAGAAAGTACTTTTGGAGgATCTATTCCAGTAATGGCGAGTTTCACCACTTTGTGGACGGGTTTAACGAGGAGAAGAGCAACTGGATGCGCTATGTGAACCCAGCGCACTCGCAGCAGGAGCAGAACCTGGCCGCCTGTCAAAATGGaaagaacatttatttctaCACAGTCAAGCCCATCCCTGCCAACCAGGAGCTGTTAGTGTGGTACTGCCCCGAGTTTGCAGAGCGCCTCCACTACCCGCCTTCTGGGGAACTCATGATGCTGAAACTCAAGCAGAGCCTCAAGGAAGCAAAGCAGCATGCGACGGAGGGTGACAGTAACCACGAGAAGGGTTCGGGGAAGAAGGAGCACAGTGTTTCAGAGATCCTCAAGGGGACGAGCAAGCAACCCAGCAAACCACAGCCAATTCCCACAAAGCCCTTGGACGATTCCCCCAAAAAGCACAGCCCCGAGCAGTCTTTCTTCCCTCGAGTCATCTACCCTGTCCGCCCTCCCATCAACGAAGAGTACTTGAAGGCCAACTCAGTTTACGGTCTAGACCGTCCCAACTACATCACACACTCGCCCATCCAGTCCTCGGCCACCCCCAGCCCCTCGGCCCGCAGCAGCCCAGAGCACAGCCTGCAGAGCAGCAGCCCCCACAGCAGCCCCGGCCTCGCGCtgtcccccccaaccccctcatCTCAGGAACACAAGGAGGGCTTTCCGTTCTCCAATGGACTTTACAGGCCGTACCCGGGTTATAATCCTTCCGGCCACCTCTCCCCCGCCTTCATACATTCATACAACTCAGTCAGCCCTCATTATTCCAGGTACCTGTTACCTCCCTACCCAGTGGGCTGCAACGGTATGAGCAGCCTGAACGGGCTGGGCACCGGACCTGTGAGCAGCCTCTTCCCACGCATGTACCCTCTCTACAGCAACCTGCTGTCGGGGGGCAGCCTCTCCCAGCACATGCTGAGCCACTCGTCTCCTCCTGGCATGCTGTCTTCTGAAGGAGGCCGGCGGCTCCTGCTCCCCTCGGAGCCTCACAGGGACTTCCTCATTCCAGCGCCAAACAGTGCCTTCTCGGCCACCGGCCTGGCTGCCAGCCTGAAGGACAAGCCATGCAGCCCCAACAATGGCTCCCCCACTGCCGGCACAGCGGCCTCCTCCTCAGAGCACGGCATGCCCACCAAACCTACCTCAGCCATGCTCTCCGGCAGCCGGAGCGACGACGAAGCCATGAACCTGAGCAAGATGAAGCGCAGTATCACCGGCTACAAGACGCTGCCCTATCCCTTAAAGAAACAGAACGGCAAGATCAAGTACGAGTGCAACGTCTGCAGCAAGACCTTCGGCCAGCTCTCAAACCTCAAGGTTTGTCACAAGCGCTTCAGCAGCACCAGCAACTTAAAGACCCACCTGCGGCTCCACTCTGGGGAGAAGCCCTACCAGTGTAAGCTGTGCCCGGCCAAGTTCACCCAGTTCGTCCACCTGAAACTACACAAGCGCCTGCACACCCGCGACCGGCCACACAAGTGCCTGCACTGCCACCGCAGCTACATCCACCTCTGCAGCCTCAAGGTCCACCTGAAGGGTAACTGTCTGGCGGCCCCCAGTCCCCGGAGCCGGTCCCTGGAGGAGCTCAACCACATCAACGAGGAGATCGAGAAGTTCGACATCAGTGACAATGCCGACCGCCTGGAGGAGATGGACAGCGTGGACGTGGAGAGCATGGTCGAGAAGCAGATCCTCAACATGCTCTGGAGGGAGATGGACCTCAAGGCTTCGTACCACAAGAGTATGGGCAGCGGGCTACGGCCTACAGGCTACGGCCTGTACGAACCCGGCAACGACGCCTCAGTCATCAAGTTGCCTCACAGTAGCCCACTACCTCTTCTACCTATAAAGGTCAAACAGGAATCTCTAGAACCCATGGAACAGTGAAATTGACTGCCTACCTTTctgaagaaaacataaaacctATTTATGACTTTTTCGCAAGCCAGGGTGCCTGTAGCAATCCAATGTACATAGTCTTCATTGTTGCATAGCAAACTTGGCTTCCTCTGTCAGGGGACCTCAATTCTCAGGGCTTAAAGAGGCGTTGGCAAGGActatttatagttttgttttgttttttcacttgtgTTAAAGACAATCATATACCcatgataattatttttttgttcaatgaTATATCTTCCTTAATTTATTATGCAATTTGTCATAGTTAAAAGCAATAATTGGAAATAATGTTTACAATGATGGGAAAATTCATTGTAATtgaataggttttattttttacttcctttGTGGCCATTCTTTGTAGATGCCTACTTTCTGCACATCTTTGTCACATTAGGAAGACCCTaagattattaaaaagaaagaatgaaagagtAATATACGGTAGTGACAATGAGTATACAATGAGTATACAGTATTCAgggttttgcaaaaaataagGACAAAATAACAGGTTTTTGTATTGCCAAAGGtggacatttaaaatgttgaacCATGGGAtcatttgtgtaaaaaaaaatgtgtagttttttttgttttgtttgttttaccttgTGAGACTTTCCTTTTTCCTCAGTATTTGTGTAGAATTAtggttaatttaattgaaaacaaaagggcattgtgtatattttcaacaaCAGTTACCTCAATCCGTGTGTCCAGTGACGATGGGGAGAAGCTGTAATATTTATTGCTTTGCTACTTGAAAAGTAAAACCAAATGTACTAAAGTCCAGCTTTCAGCTCGGCCCAAAGAATAGGAGAGATCCTTTTAGATGTAGCATGTCGGCTGCAAAACTGGGAATCCATTATTTACAAAGAGAATCTTTGAACTATCAATACCAAAAGGAGATGTCTGAACTTTGGTTTTTGGACATGAGGCTAGTTTCCAAAGTTCAGCTTTTTTCATATACCAAATAAGAGAAAATACTGCTTGTGTAAATAATGAAGTGTTAGGTTCTTAGTTGTGATCTGTATTGTAgctttgtttcatgtttgttttaatctccCCATTGCTTTCATTTATAGCACAGACCAAAGCATCACTACTCTTTCTCTGGACACACTACCTGTCTgtagtgctttttcttttgatatGATTTCACCCATTATTTTTAGCGATAGCTTTAAGATGAACTTGTCTCCCTGCCGACTGCATTTATTACAAGGATCAGCGCCACCGAATGTAGCAGCGCAAGCAGTTAAAAGCTTTTCTCGATCTATGACCAAAGTTTCCCCAGCTCGAGGCGTAAATCTTTAGAGGAAAAACTGTTTCTTATGTTTACATACTGGtttacattgttatttatgTGCAACTTGTCAAATTGTAAATTATGATATACATGTT

Function

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0051155 positive regulation of striated muscle cell differentiation biological_process
GO:0007521 muscle cell fate determination biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0014033 neural crest cell differentiation biological_process
GO:0000578 embryonic axis specification biological_process
GO:0045666 positive regulation of neuron differentiation biological_process
GO:0060037 pharyngeal system development biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24501 PRDM1; PR domain zinc finger protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003983 True 3828 mRNA 0.48 7 28259696 28275388

Neighbor

gene id symbol gene type direction distance location
AMCG00003982 NA coding upstream 161370 28098060 ~ 28098326 (+)
AMCG00003980 NA coding upstream 165094 28062555 ~ 28094602 (+)
AMCG00003973 grik2,LOC103365520,LOC107103501,LOC105917636 coding upstream 753547 27492506 ~ 27506149 (+)
AMCG00003972 grik2,LOC107667969 coding upstream 809802 27430090 ~ 27449894 (+)
AMCG00003977 grik2,LOC101466412,LOC102291713,LOC102207761,LOC107740554 coding upstream 877694 27380559 ~ 27382002 (+)
AMCG00003985 NA coding downstream 79127 28354515 ~ 28369974 (+)
AMCG00003989 NA coding downstream 97758 28373146 ~ 28379173 (+)
AMCG00003992 rnf146,LOC107735261 coding downstream 312443 28587831 ~ 28591593 (+)
AMCG00003994 NA coding downstream 414500 28689888 ~ 28698767 (+)
AMCG00003998 LOC105908890,LOC105419921 coding downstream 442394 28717782 ~ 28731033 (+)
G4837 NA non-coding upstream 153989 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 482037 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 483254 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 675662 27583571 ~ 27584034 (+)
G4787 NA non-coding upstream 977455 27282004 ~ 27282241 (+)
G4917 NA non-coding downstream 191529 28466917 ~ 28468944 (+)
G4981 NA non-coding downstream 617296 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 677165 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 1079133 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 1408839 29684227 ~ 29685543 (+)
G4831 NA other upstream 156485 28062363 ~ 28103211 (+)
AMCG00003962 NA other upstream 1672804 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 2174574 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 2463901 25785173 ~ 25795795 (+)
G4360 NA other upstream 3575776 24683400 ~ 24683920 (+)
AMCG00003988 NA other downstream 104423 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 179031 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 292796 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 364786 28640174 ~ 28683981 (+)
AMCG00004011 ccnc other downstream 1252026 29527414 ~ 29541358 (+)

Expression


Co-expression Network