AMCG00003985


Basic Information

Item Value
gene id AMCG00003985
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28354515 ~ 28369974 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003985
ATGTTTGCTGCAGAGTGTTACACACGTGAGACGTTTGACAGCTGGAAGCGACCTTCCTTGGAGATCGAGCAGATCCGCGAAGAAAGCCGCAGACGCAGTGTTAGCTTGGCAAATCTGTCATATGGAGGATTGAACGCCTCATCTCCGAAATCTATTATAAATAGACGACCCAGTAAAGTCAACTGTTGGTCTTTAGATTGCGCGGAGGCTTTGTGTAGAACTGGAGCATCAGTTTCATCTCATTTGTTTGCAGATGACAACCGAAATAAAAACCGCACAAAGAAGGAGAAGAGAAGGGTTATCCAAAAACCTGTTGGGACAGTAGAATATACAGCAGGGCCTCAGGACACTCTAAATTGTATAGCTTTGAAGTTCAACATCACTCCAAATAGACTAGTGGAAATCAACAGGCTTTTCTCTCATACCATTGTTCCTGGGCAGactcTCTATGTTCCTGATGTGGCTCAGCAGGCCGAAGACGCCAGTTCTCTGCCTCACAGCCCCAGCAGTCCAGCATCCACCCTCTCCTCAACTGACCAAGAGTTTGATAAACTGTCGGATGCTGACTTTGCCAGGAAATCATCAAAACCCATCCAGAGAGTGCTGTCCTCAGCCTCTGAAGAGGAAGAGCCCATGACTGTGAAATTTCTCAAAATGAGCTGTAGATACATCACTGACGGGAAGGGAGTAGTTGGTGGAGTTATGATTGTGACCCCAAACAACATCATGTTTGACCCTCATAAGTCTGACCCCCTGGTGATAGAGAATGGCTGTGAAGAGTACGGACTGATTTGCCCCATGGAGGAGGTTGTCTCCATCGCTCTGTACAACGATATATCACACATGAAAATCAAAGATGCACTGCCATCCGATCTACCCAAGGATCTTTGTCCCCTCTACAGGCCTGGGGAGTGGGAGGACCTCTCCTCTGAGCAAGACATCAATCCCTTTAGCCGCTTCAAGGCCTTGAATAAAGAGAAACGCCAAGCACACATGGATGAGGTAGAAATAATCACACCAGAATCGGAGACCACAGAGAAGTCCCAGTCTGATGAAGGATTCACAGAGATAGAACCACCTGGAAACACTGATAAATTACTAATAGAGCCAGTGTCAAGTGGTACCTGTATTCCTGTCAGTGATTTTTCCCAAGCAGACCAAGAGGCCATGGGGCCAGTGGTCTTTGAGCAAGACCAGCCTGAAGATGAAGCAATTTCAAATCTGCAGGGTACAGCATGCCCTGTGTTGGAGGAGTCAGAGAAAGGAGAGAAGACTGAGCTAGAGAAACAAGGGTCTCTCCAAAATACTCAGAAAACAGATATTTCTATACTTAAAGACATTCCAAAAGGGAAAGCACTAAAAGGGAGTGAATTACCTGATGAGTTGAGTCATGAGGAAAATGCACTTGATACACGTAAACTCTCTTATGTAGATTCAACACAGTCCGAGATATTACACAACAGTAAGAACGAGGCCTGCTCGTATACAACTGCACACAAGCCAGCTGTAGACCAGAAGAGCAAACGCAGCTGTTTTAAAGAAATAGAGGTGTCTGGTAAATTGAGCCAATCTGAGGCAGACATAGTCTCTGAAGTATTAAATGGAGACACATCATGTCTGCTGTCTCAGTCGGAGGAAGACGAACAACAGCAGAACAGCGAATCAGAAATGAAATCTTGGCTGTTCAAAAGAATACAAGGACCAATTGAggATATGCTGGTGTCAAAGGAGGAGAAAATAGGAATTGCTTTCCTTAACCTCACACTTCATTCATTTTTCAGGGTGGATCATCTGTATGCCTTCTTTGTGCAGTGGTCTCCAGAGATCTATGGAAAAGATGCCAAAGAGCAAGGCTTCATTGTGGTGGAGAAGGATGAGCTCAATATGATAGACAACTTCTTTAGTGATCCAACTCCGAAAAGCTGGGAGATCATTACTGTTAATGAGGCAAAACGACGGCAGAGCTGTGGCAGCtatgatgaggaggaggaggatgtggAAGACCTGCTGCCTGTGCTGATTGATGACAGTGTGCTGTTGGAGGAGATGCACATTGAAAGGCTCGCACAGCGCCTGCCAGCCCGCACTCAGGGCTATCCATGGCGATTAGTGTACAGTACGGCTGTTCACGGATCGAGCCTGAAAACCCTGTACCGCAACCTGGCCCAGCTGGACAACCCAGTGCTCTTGGTCATTAAAGATATGGACAATCGGGTGTTTGGGGCGCTCACGTCACATCCGTTCAGAGTCAGCGATCACTGCTACGGCACAGGAGAGACATTCCTCTACACCTTTAGTCCTGAGTTTAAGATGTTCAGGTGGAGTGGAGAAAATTCTTACTTCATCAAAGGAGACACCGACTCCATACAGCTGGGATGTGGAGGGGGACACTTTGGCCTGTGGATGGATGCAGACTTGTACCACGGCTCCAGCTATCCCTGCCACACTTTCCACAACGAACCGCTGTCCAAGAAGGAAGACTTTATCATTCAAGAGCTTGAAGTATGGACCTTCGAGTAAAAAAGCCGAGGACTGGAGTAATGAGTTGCCTTAGTTATGTACATAGTTTACATAAGGGCCAACAGTTGAGAGGACTGGTTGGTTACATTCACACTGCTGGCTGCCTTAGACCACAAAGCAGTGCTTGTGAGGCTTCCTGTGCCACAGCATGCTGGCCAAACTTCGCGGCTGTACAAGTCCCAAACCACTACAAGCTGGCCAAAGGAAGTGCTGATGGGGGAGTTTGTCGCCTCCTTGTTTGTTCTCGTTTTTCTGGTTTATTTCAATAGGTGGTTGGGCCAAACTGAAGACACGGAGAAATCAGGATAGTGTTTCACCACGTCATGTGCTTCATTTTGTACACAAGAAATCGTGTATTCTCTTTTACTTTTTCATGCATCACTTAGTAATTCTAAGAAAACATTGTAGACTTGATCAATCCGTCCcatcaaaagaaaatcaatgcacaaaccatttatattttgaccaaatgtttgtttgtgtttgtatgtgtaatttttatgtttgtgtgtgtattttttcagatattttgtttttcttttatatattaataaacaaaacttgtaaatgaaatgtatgtattcccTTAtcatataaggaaattatttttgtttgtttagttttctgtttgaattttcttagttttttctttcagtgctgGCACTGGATTGTCAGGAATGCAATGTTTCCTTTaggattatttaattatcattgttttaaatacaaatgttgctCTACAATCAAAGTCTTTCCCTGCATTAAGTGCAGTACTAAATGCCTTAGGCTTGGAGCATTGTAGAGACGGATGAGACCAGTCATTCACAAAGAATTTAGTGCAAGTGATTCAGAGTGTTATTTTTCACTTCATCAACCTTCTTCATGTATAAAACTTTGAGCGTGTGAGAAGGTAACAGTCTGAAAATGAATTGTGAGATCTAAATGGTTGTTGTTGTCTGTGGAATGTACTGTCTGCCAGTGCACCAGTGCTGGTTCTGTTCTTCTGCTAACATTCACAGCTGCTTGGAAAATTAACTTGTGTATTGATGCATATGAACCACTCGCATCGATAGGGTAGGGAAAAACTCAggtgtgttaatttatttaaagcatgATGAATTCCTCTGCTAACAGCGTCTTTTTCTCAATGTATTTCTATAGAAGACTGCATATATATCACAGTGGCTGTTATTTACCATTAAATATGTTCTAATAGAATGTCATATCCTTCCACCGGAGGCCATCTGTCCCAGTCCTGTTTTAGgcattgtggtttatttatgaCTAAACAACATGTATGCTATTATTGGGTCATGTCTTTCACTAAATGATTGATTGACCATGTGTTTACCATTCTCGAAGTTCACATCAACTATGAAATGtaagaaagtaaataaaataaaaaatccaagCAAAAGCTCAAGTCTGGAACTGCcatcatattttctttctaaaaatgtaagCCTTGTCTGattattgcatatatatatatatatatataaaaacactgatGAAACACTATAGCAAAGTAAGCCATGTAGTACTCCATACGTGTTCTTTGTGAGACCAAAAATGTTCCATGCTCTGTGGGATaagcaattatatatttattacactgttgcaatgttttaaaaataaaacatgtattgta

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003985 True 4168 mRNA 0.42 15 28354515 28369974

Neighbor

gene id symbol gene type direction distance location
AMCG00003983 NA coding upstream 79127 28259696 ~ 28275388 (+)
AMCG00003982 NA coding upstream 256189 28098060 ~ 28098326 (+)
AMCG00003980 NA coding upstream 259913 28062555 ~ 28094602 (+)
AMCG00003973 grik2,LOC103365520,LOC107103501,LOC105917636 coding upstream 848366 27492506 ~ 27506149 (+)
AMCG00003972 grik2,LOC107667969 coding upstream 904621 27430090 ~ 27449894 (+)
AMCG00003989 NA coding downstream 3172 28373146 ~ 28379173 (+)
AMCG00003992 rnf146,LOC107735261 coding downstream 217857 28587831 ~ 28591593 (+)
AMCG00003994 NA coding downstream 319914 28689888 ~ 28698767 (+)
AMCG00003998 LOC105908890,LOC105419921 coding downstream 347808 28717782 ~ 28731033 (+)
AMCG00003999 NA coding downstream 361935 28731909 ~ 28751998 (+)
G4837 NA non-coding upstream 248808 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 576856 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 578073 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 770481 27583571 ~ 27584034 (+)
G4787 NA non-coding upstream 1072274 27282004 ~ 27282241 (+)
G4917 NA non-coding downstream 96943 28466917 ~ 28468944 (+)
G4981 NA non-coding downstream 522710 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 582579 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 984547 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 1314253 29684227 ~ 29685543 (+)
G4831 NA other upstream 251304 28062363 ~ 28103211 (+)
AMCG00003962 NA other upstream 1767623 26582667 ~ 26586892 (+)
AMCG00003948 sesn1,LOC102782344 other upstream 2269393 26081283 ~ 26085122 (+)
AMCG00003930 wasf1,LOC107661360,LOC107556997,LOC107739187,LOC107564591,LOC107667835 other upstream 2558720 25785173 ~ 25795795 (+)
G4360 NA other upstream 3670595 24683400 ~ 24683920 (+)
AMCG00003988 NA other downstream 9837 28379811 ~ 28399741 (+)
AMCG00003990 NA other downstream 84445 28454419 ~ 28465646 (+)
AMCG00003991 NA other downstream 198210 28568184 ~ 28585674 (+)
AMCG00003993 NA other downstream 270200 28640174 ~ 28683981 (+)
AMCG00004011 ccnc other downstream 1157440 29527414 ~ 29541358 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location