AMCG00003992 (rnf146,LOC107735261)


Basic Information

Item Value
gene id AMCG00003992
gene name rnf146,LOC107735261
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28587831 ~ 28591593 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003992
ATGGAGAACCGCGTTTGCAGATTCATGGTGTTTAAATCCCCCCGAAGCCCAGAGCCCTGGCGCTGTTCCGCCCGGTGCGACGCCGGCGGGATGGGTGTCGGGGTTGTGGACGGGCTGCTGTGGATGGCTAGCTGCGGAGAGGTTGACCACACACTGAACATGCTTCCCTCTAATAGGAAGGGGAATGAGCCCTGTTCAAGTACATCCCCTGCCCTTTCAGTCCCCGAATGTGCCATATGCTTACAAACCTGCGTTCATCCCGTCAGACTCCCTTGCAGGCACATCTTTTGCTACCTTTGTGTAAAAGGAGCATCATGGCAAAGCAAGCGCTGTGCTCTGTGCCGGCAAGAGATCCCTGAAGACTTTCTGGAGAAGCCCACCCTGCTGTCTCCCGAGGATCTCAAGGCCGCAGGCAGAGGAAACGGGGAGTACGCCTGGTACTATGAGGGTAGGAACGGCTGGTGGCAGTACGACGAGCGCACCAGCAGGGAGTTAGAAGACGCTTTCTCCAAGGGCAAAAAGACTACAGAGATGCTCATAGCCGGGTTTTTGTACGTGGCAGACTTGGAGAACATGGTTCAGTACAGAAGGAATGAACACGGTCGGCgcagaaaaatgaaaagggacATTGTAGATATTCCCAAGAAAGGTGTAGCCGGCCTTCGATTGGACACTGACTCCAGTGCTGTAGCTGTGGCCCGTGAAAATTCAGCGGACGGGGCCGATACCGCTGTAGTTCAGGGGGCTGCCGCTGCGTCCACacgtgctgctgctgctgtgaggCCCCCTACGTCTCTAGGAGGCCAGCCCACGAGCCCTTCATCCCCATCCCCTGATGCCAGCAGTTCCCTAGAGGACTCCTTTGCCCAACTCCAGATTAACAACCAAAGTGGGGTGGACAGAGGACGCaatggagagggggaggaggtggaggaggatgCAGTCCTGTCCCGTGGGTCCTCTGCTCACAACACCTCCGTGGATGAGTCAGAATCTGAGAGCAGcagtgaggaggaagaggaggaagctgAGGACGATGTAAGCGAAGTAACTGGTGAGCAGCCACAGCACGTCTTGACTACCAGGCAAAGACTGCATCAGCACGACAGGTTTAGGGAGAACCAGGCAGACAGGCCTGCTccaggaggagaaccaggcaaCAACAGCAACGGCGTGAGATCAAGGAGACCTGATGGACAGTGTACAGTGACTGAagtttaaattgcaaattgtaCTGGAATGGGAGCTGAGATTATCAGCCAGTATTGCACTTGGAACTAAAGCGTTTCTAATTGCTACCTTTATTTAGAAATCTGAAGGGCACTCTCATAattcaaaaagtgaaaaataaagaaaactataaGGCCTAATGCAGAACACCAAATTTTAATAATGTAGCTTGTCTTCACAACATACAGAGGGCTGTTTTTGTCCACTATTTGGTTATAATAGACTCTTGCTgtctaaaattaatatttaaagtcaCCCTTTTTCCCCATTGAAGCCCAAGTCAATATTCTGAATTGGTGTGTTTCATAAACGGAGCATGGTCTTTCGGTgttaaattcatatttcattGTAATATGCTTGTCTGTATCATTACTTGTGCATGTGTTGTTGTAAGAGAGGGTACTAAACGCTAATGACAGAAAGATCAAGAGTTTTGGTTTTAGAATTAGATTGGTTAACTTTATTGGAGTCTTAAACTCAGCTTTCTTGTAATTGGCAGACCAGTGTTTGCTAAATGATGAGATAAAAGATCTGTACAGTCTGCTTATCTGAAACATGGGTTGTCTTTTCTGCATTGCAAAGTTTTCAGTGTAATGATTTTTACGGTTCTTACGAAATGTCATTGTCACTCGCCCCTGCCATTCTAGTCTCTCAGTCggttttaaaacataacattttttttttgctgtattttgctttattgtaatattttgttactttattttaaatttacaaatcTTGTATTTGTCAATTTATCAACCCAAATAACAAGTTTCCTAGCATCTGTAAgctgtgattttgaaatgtgcta

Function

symbol description
rnf146 Predicted to enable poly-ADP-D-ribose binding activity and ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of canonical Wnt signaling pathway; protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within Wnt signaling pathway. Predicted to be located in cytosol. Predicted to be active in cytoplasm and nucleus. Is expressed in female organism. Orthologous to human RNF146 (ring finger protein 146).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase RNF146

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0072572 poly-ADP-D-ribose binding molecular_function

KEGG:

id description
K15700 RNF146; E3 ubiquitin-protein ligase RNF146

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003992 True 2041 mRNA 0.47 2 28587831 28591593

Neighbor

gene id symbol gene type direction distance location
AMCG00003989 NA coding upstream 208658 28373146 ~ 28379173 (+)
AMCG00003985 NA coding upstream 217857 28354515 ~ 28369974 (+)
AMCG00003983 NA coding upstream 312443 28259696 ~ 28275388 (+)
AMCG00003982 NA coding upstream 489505 28098060 ~ 28098326 (+)
AMCG00003980 NA coding upstream 493229 28062555 ~ 28094602 (+)
AMCG00003994 NA coding downstream 98295 28689888 ~ 28698767 (+)
AMCG00003998 LOC105908890,LOC105419921 coding downstream 126189 28717782 ~ 28731033 (+)
AMCG00003999 NA coding downstream 140316 28731909 ~ 28751998 (+)
AMCG00004003 NA coding downstream 490500 29082093 ~ 29108404 (+)
AMCG00004009 NA coding downstream 551169 29142762 ~ 29184704 (+)
G4917 NA non-coding upstream 118887 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 482124 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 810172 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 811389 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 1003797 27583571 ~ 27584034 (+)
G4981 NA non-coding downstream 301091 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 360960 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 762928 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 1092634 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 1106074 29697667 ~ 29699224 (+)
AMCG00003991 NA other upstream 2157 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 122185 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 188090 28379811 ~ 28399741 (+)
G4831 NA other upstream 484620 28062363 ~ 28103211 (+)
AMCG00003962 NA other upstream 2000939 26582667 ~ 26586892 (+)
AMCG00003993 NA other downstream 48581 28640174 ~ 28683981 (+)
AMCG00004011 ccnc other downstream 935821 29527414 ~ 29541358 (+)
G5245 NA other downstream 1679617 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1705274 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 2296402 30887995 ~ 30894827 (+)

Expression


Co-expression Network