AMCG00003994


Basic Information

Item Value
gene id AMCG00003994
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28689888 ~ 28698767 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003994
GCTTGTTTAGAGAACATGGAGGACCTTCAGATGGTGGAGGAGAAGATACTGCAGTGCTTGTCTGGGGAGTGTACTCTGCTCCAAAGCTTGGCTATAAACAGGTCACTAAGTGACCTAAAAAAGCACTACGACGAAGCTTTAGCTAAAAAGTTCAAGCTTGCTGAATTAGAAAAGTCTACCCTAGCTGCTAGAGAAGGGTTCAGACTCATTGCAGACAGAGCAGCATTGATGTTCAATCTGTCCAATACAATGAGACAAGTGAACCCTGTGTACCACATCAGTTTTGACCAGCTTCTGGAGGTTTTCAGTGCTGCCATTGTTCATTCAGAGAGATACTCTATCAAGACTCTAGTTGAACGTATAACATATAACTTATTTTGTTACATTGGCAAGTATATAATGGAAAGAGACCAGATGGTGTATACCCTGCTTTTAGCATTGGAAATTGAAAGCTGTCTGGGCCACGTAACCCCAGGCATGATCGAGTTCCTCATTTGTCCAGACCTCTGTGTGGCAGTGATGGAGGCCATGCAAGCAAAGCCTTCAGAAGCCAGGCAGCACGCAAAGAATCCATTTGAGTGGATGACTGAAGAgcagtttaaaaatgtgcagATTCTGGCTACATATTACAGCTGGTTCCACAACCTTTTTGATCGGATGTATAAGGATGGCAAGGACATGAGTTGGAAGTCTCTGTGTGACAGCGATCAGCCAGAGAACACAGCGAAGGCGAAGGGCCCAGAAGGGCTCGGTGGTCTGGGTCCGCTGCAGCGTCTCCTGGTCATCCGGGCGATCCGCAGCGACAGGCTGACGCAGGCAGCATCGCTCTACATCAGCAGCGTTCTTGGAAAGAAATACGTCACAGAGATCCCATCCGATCTTCAGGCCTGTTTACAGCTGACAAAACCCCAGACTCCTATTCTGCTGCTCTACAGCTCTGAGGCCGATGAGCCCCGCAGGCAGATCCTGGAGCTCTCTGCTCGAAGGGGGTGTGAGACTCAGGTTGTGTCTGTCAATGGTGGGAGTATCAGTGAAGAGAGGAGGATAAGATATTTGATTGAAGAAAGCCAGGCCAAGGGACGCTGGCTTTTACTGGAGAACATCCATAATTCACAGCCCCTGATGACCTCAGTCGAATGCCTGCTGCTTGCAAACAAGAGCCCAGACAGACATTTCCGCCTGTGGATTTCGGCTCAAGTCATCAGTAATGTACCAGTGCAGCTCCTGCATGCGTCACTGCGAATTATTACAGATACACCGAAGAATATGAAAGATGCCATGGTGAGGTGCATGCAGCAGGTATGCTCAGACACATTGCACAGCAGCGGCCGTCCCGAATGGCCAGCCCTCATCCATAACCTGTGCTATGTGCACTGCGCTGTGCGGCTCCGGGCGAGCTCTGGGGGTCCCACAGGATGGAACTGCAGAGACGCCATGATGTTTGGAATCCAAGACTTCAGAgaTGCTTTGCAAGTGTTAACAGAAGAATTCAGAGACCGGTCTGCAGAAGCAGAGGGGAGGAGCATTTCTTGGACCGGGATTCGGTATCTCCTATCGGAAGTAATTTAtgggaaaaatataattgatgaCTGCGATAAGAAAAGTCTGGCAtcattgtttgatttgtggATCAGTTCTACTGCCACCAAGAAAGATTATGACATGACAAAATTGAGATACAGGATCCCTGCTGCCTTCTTCGACCCTGACCTGCAGTTGAACAACCTTTTGCAGGCCCTAGACTGCATCCCTCGCCATGCATTGGATGTCCCTGAGGGTGTCAGCATGCACTCCACTCCAGAACTCCACTTTGGAGATGAGAAGTATGTTTATAGTTGGTTACAAACCCTCTATGACTCCTTTTTGTTCCACCAGCAGCAGCACTCCTTGGCAATTCAAAAACATCACAGGAATTTCCTAATTAAATCCAACAAAGATCAGGAAGTGTGGGAGATTTGCTACAATATCTTGGCTAAACTTCCTAAAGGATGGAGCAAGgcCATCAGGAACAGCACTGAGTGTCTGCTCACACTGGGGGACAGCCTGACGGTGACGGAGCTCTCAGTCGCTCGGGACCTCTCTCAGCAGCGAGTCCCCTCACACTGGAGCAGCCTGGCAGGCATGGGCTCTCCTCCTGAGCTCTGGACAGCAGCCACGTGGATCAGGGACCTGCAGCAACGAACTTCCCACTTTGAAAAGATTCTGCAGCTTGGTCAAGAAAAGATGCCAACATACTGGCTCAGTGCCTTTAAGAATCCCAGGGGGCTGTTGGGGGTGTTCAGACAGCAGAGCGTCCGGAAACACGCAGAGCAGTCGAGCTTCACGGAGCCCATGGAGTTTCACACCATGATCACACAGAGAGATAAAGACCATATCCGGGATCCTCCCCAGGAGGGCATGTTTGTGTACGGGATCCATGTGTGGGGCGTCTCCTGGCACAAGACGGAGGCGGAGCTGCTAGATGCCCCTCCCAGACATGGCCCAGTCTGCCTGCCAGTCATTCACCTGCAGTGTCTTCCCAGGTCAGAGAAAGCCAGCCTCACAGAATCCATGAGAAGCTTCGATTCGTATCAGTGCCCTGTGTACAGCTCATTCACAGGAGCCCGTGAGCCAGTCCTGCATCTCGACATTCACAAAGACAACATCCCCGCATCGAGGTGGGCACTGCGGGGGATGAAGGCAACACTGCAGCCATTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003994 True 2700 mRNA 0.50 17 28689888 28698767

Neighbor

gene id symbol gene type direction distance location
AMCG00003992 rnf146,LOC107735261 coding upstream 98295 28587831 ~ 28591593 (+)
AMCG00003989 NA coding upstream 310715 28373146 ~ 28379173 (+)
AMCG00003985 NA coding upstream 319914 28354515 ~ 28369974 (+)
AMCG00003983 NA coding upstream 414500 28259696 ~ 28275388 (+)
AMCG00003982 NA coding upstream 591562 28098060 ~ 28098326 (+)
AMCG00003998 LOC105908890,LOC105419921 coding downstream 19015 28717782 ~ 28731033 (+)
AMCG00003999 NA coding downstream 33142 28731909 ~ 28751998 (+)
AMCG00004003 NA coding downstream 383326 29082093 ~ 29108404 (+)
AMCG00004009 NA coding downstream 443995 29142762 ~ 29184704 (+)
AMCG00004007 me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750 coding downstream 561193 29259960 ~ 29265240 (+)
G4917 NA non-coding upstream 220944 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 584181 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 912229 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 913446 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 1105854 27583571 ~ 27584034 (+)
G4981 NA non-coding downstream 193917 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 253786 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 655754 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 985460 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 998900 29697667 ~ 29699224 (+)
AMCG00003993 NA other upstream 5907 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 104214 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 224242 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 290147 28379811 ~ 28399741 (+)
G4831 NA other upstream 586677 28062363 ~ 28103211 (+)
AMCG00004011 ccnc other downstream 828647 29527414 ~ 29541358 (+)
G5245 NA other downstream 1572443 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1598100 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 2189228 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 3701638 32400405 ~ 32402383 (+)

Expression


Co-expression Network