AMCG00003998 (LOC105908890,LOC105419921)


Basic Information

Item Value
gene id AMCG00003998
gene name LOC105908890,LOC105419921
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 28717782 ~ 28731033 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003998
GCGGGATTGGCGGAAGTGGCGAAATTTGAAAGTGCAGAGGAACAAAACAGTTGTCGGAAGGGATTGATGCGGTTTTATGTGGTCTTACGCTGAGAAAAACTAAGCAATTGTTACATAAAGTGGATTTGCAaCATGGAAGATGACCAGCATTCGGACAGGCAAATGCAGCTTGCCCTGCTGTCTCAGAAACTGaagcacattaaattaaaatactgcacTGACGATAATACGGACAACATGAAGCAGATTTTAAGTTCCAGCTCTCCTGAATCCTGTTTAGCATATTTAATGAATGCTGAGAAGAGAGGCAACCCTAATACTGATTCCAGTCTTCTCAAAAAACTGATGGACCGCTACACTCTGGCGTTTTCTTATCTCCCGGTGGAAAAGCACAGTCAAAATGAAAGCTATGCAAGGATGCTGGTCAGGTTTGCAGAACTGAGAGCcattCAAGATCCAGATGAGGCACATGATGACTTCAATATGGCTAGAATCAACAGCAAGAGTTTTGCCTTTGTGCACATTGCACATGCACAGTTCGAGTTGTCGCAAGGCAACATAAAGAAAAGTACTTCAATACTACAGAAGgcatttgaattaaatgctAGACCCACTGAACTTCTGGAGGTGGCGATGCAGAATTTAAAATCTGGGAAAGCTCAACTGCAGTCACCAAATGATAAAGAGAATATGATTGTGCCGTCGGTTTACGGTGTGCAAGAGTCCAATAAAAACAGCCTGGAATTTCCAAAACTCAGTCATAACCGTGACAGCACCGGAGATTTACAGCTGAGCAGTTCCTTCTGCTCTCAAGGCCCTGAAAACCGCTTCTGGGAGGAGCCTGGAACTGCCGAGTCAACTGTGACTCTGTTGAACAGAGTGCATGAAAAGGCTACTTCTGCCACAGAAGGCACTCCATCCCAAGTTCTGACTTGTTCCGATAATGTGAGGGAGAAAGCGGAGTCAAAccagtttaaaatgtcttcgCATTTGGAGCAATGTAAATCCGTGTATAAAGAACCTTCTTCAGAATGGAAAATACCAGCACGGATAACTAGACCCATCTCCCCTGAGAACAAGCAGTCACCAACAGAACAAGCACAACCACAAGCTCAAAACCCCATTTTTGGATCATCCAGAAGGAATTTCTTTGAAACACCAAACTATAAAATGTCTGGCAAGAATACAAACAGcgTTGTTACTCCAGTTTTAAATAAAGACCCTCCAGCAATGGCACAGATCTCAACACCTTACAATTATGGGTCATTTCCGCACCCAGGTCAAGTACAGCAACCCTTCACCCCTTTCAGCCAGACACCCCAGGGTCCTGCTTCTGCCTTCTCTAATGAATCAATCACAATTAAAGGGAGAACCTACTTCATACTCAAGCAAATAGGCAGAGGTGGCTCCAGTAAGgtGTTCCAAGTTCTGGACCACAAGAAACAGCTGTTTGCTGTTAAATACGTGAATCTGGAGGAAGCAGACAGCCAAACCATTGAGAGTTACAGAAATGAGATTGAGCATCTCAATCATCTACAGCAGAACAGTGATCAGATTATAAAGCTTTATGACTAtgagATGACGAACAGCTATATCTACATGCTCATGGAGTGTGGCAATCTTGACCTAAATACTTGGCTAAGAAGCCGAAAATCTGTCAACCCCCTGGAGAGAAAGTTCTATTGGCGAAACATGTTGGAAGCTGTGCAAACTATCCATCAACACGGAATCATCCACAGTGACTTGAAACCAGCTAATTTTGTCATCGTAAACGCGTCACTGAAACTCATTGACTTTGGCATTGCCAACCACATTCAACCTGATGTAACCAGTATAGTGAAGGATTCACAGGTTGGAACTCTCAATTACATGCCACCTGAAGCCATTAAAGACCCTTCATCATTTGGAGGAAAACCAAGGTCCAAGATCAGTCCTAAAAGTGATGTTTGGTCACTTGGATGTATTCTGTACTGCATGACGTATGGAAAAACTCCGTTCCAGCACATTACCAACCAGATCACGAAACTACAGGCCATCATTGATCCTTCCTGTGACATTGAGTTTCcagacatttcagaaaaagaCCTCCAAGATGTGTTAAGgAGGTGTTTGGTACGCAACCCAAAGGAAAGAATCTCCATTGCAGAACTTCTTGAGCATCCATACCTGCAGCTGCAACAACAACGGCAGCCAGAGCCAGCTCAGTTCAACAATCAAGATTTGAAGCGTATCTTCAGTGAGCTTGCAGCTTTAAATTCCCCACGCAGCATTTCCAGAGCCGCTAATAACTTGGCAAGGATGTGCAACAGTGGGCAAAAGCTTGATCTCTCGGAGTGTGTAAAACCATCTGGCCTCCCTCCTTGGAAGATTTAAAGcaatatgttttttcattgctttataGAAAATATTCTGTAAATATTCTGCTGTTTTGAAACTTCGAGTAATCCTTCCACAGAAAGAATTAAGATGAAGCTCCTTTTTGGACTACATATAACAAAGGACCATTACTGTGTTAATctggaaaaaagtattataaatgttttgtcatactttcGATATTTGACCACTATGGCACCCAATGCGTTTTAGTATAAATGTTCTTCtgtcaaataaaaagaaatggcaacatcttttaataaccttttttgtttgttcaagaTTTGATGATGCAGGGGGACAAATGAACTAATGTACTGTCTAGAGAAAGTGAACGTATTTGTAGAGAGCTGAATATAaacctgtaattaaaatatggCTTTTctaagaattacattttacttttgaaaactGATGTGGGAATTCTGACATTCAATTCAATTGAATAGCTATCTTAAAGTGGTCTTTAAGACGATTTTGGGTCTTTACTGATATGACTTGC

Function

NR:

description
PREDICTED: dual specificity protein kinase Ttk-like

GO: NA

KEGG:

id description
K08866 TTK, MPS1; serine/threonine-protein kinase TTK/MPS1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003998 True 2878 mRNA 0.42 19 28717782 28731033

Neighbor

gene id symbol gene type direction distance location
AMCG00003994 NA coding upstream 19015 28689888 ~ 28698767 (+)
AMCG00003992 rnf146,LOC107735261 coding upstream 126189 28587831 ~ 28591593 (+)
AMCG00003989 NA coding upstream 338609 28373146 ~ 28379173 (+)
AMCG00003985 NA coding upstream 347808 28354515 ~ 28369974 (+)
AMCG00003983 NA coding upstream 442394 28259696 ~ 28275388 (+)
AMCG00003999 NA coding downstream 876 28731909 ~ 28751998 (+)
AMCG00004003 NA coding downstream 351060 29082093 ~ 29108404 (+)
AMCG00004009 NA coding downstream 411729 29142762 ~ 29184704 (+)
AMCG00004007 me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750 coding downstream 528927 29259960 ~ 29265240 (+)
AMCG00004008 me1,LOC106583951,LOC106605032 coding downstream 574171 29305204 ~ 29321613 (+)
G4917 NA non-coding upstream 248838 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 612075 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 940123 27777290 ~ 27777659 (+)
G4806 NA non-coding upstream 941340 27721460 ~ 27776442 (+)
G4804 NA non-coding upstream 1133748 27583571 ~ 27584034 (+)
G4981 NA non-coding downstream 161651 28892684 ~ 28893031 (+)
G5005 NA non-coding downstream 221520 28952553 ~ 28953065 (+)
G5085 NA non-coding downstream 623488 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 953194 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 966634 29697667 ~ 29699224 (+)
AMCG00003993 NA other upstream 33801 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 132108 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 252136 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 318041 28379811 ~ 28399741 (+)
G4831 NA other upstream 614571 28062363 ~ 28103211 (+)
AMCG00004011 ccnc other downstream 796381 29527414 ~ 29541358 (+)
G5245 NA other downstream 1540177 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1565834 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 2156962 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 3669372 32400405 ~ 32402383 (+)

Expression


Co-expression Network