AMCG00004003


Basic Information

Item Value
gene id AMCG00004003
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29082093 ~ 29108404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004003
CTGTGCTTGGGCTTTGTGTGTCTCACAGCCATACATCTTTGCAGTCAGGGCAGCAAGGAAATACGGGCGAAGGACTGTAAGCGTCCAGGGGCCGGTCTCCGACACTGTGCTGACCCGGAATTATGTAGAATCCACACCAGTTTTACACGATTGCGTATTTTGTTAGCTTCCTTCTGTAGTGTCTACGTTTACCCGAGTGTCAAGGGCCCAATATACTATAGTCATTATACCTGTTATTATCCATCCTTGTCCTGCCCTGTCGTAGGCAGCCTTCTTGTTCTTTCCATAATTTATTGACTGGTTTATAACCTGGAAACGGTGATGATTGTGCATGAGCGCGGTGCCGGCCAGTAGCAGTATTGTACAGGAGGATGAATACAGAGGAGTTGGAACTGCTCAGTGACTCAAAGTATAGAAATTATGTAGCTGCTGTGGACAAAGCCCTTAAAAGCTTTGAGTACTCCAGCGAGTGGGCAGATTTGATATCTGCTCTGGGGAAGCTTAATAAGgtTTTGCAGAACAATGCCAAGTACCAGGTTGTGCCCAAAAAGCTAACGATTGGGAAAAGGCTGGCACAATGCCTTCACCCTGCTCTGCCCAGCGGAGTCCACCGCAAGGCTCTGGAGACCTACGAAATAATCTTCAAGATCATTGGGCCGAAACGGCTGGCTAAAGACCTCTTCTTGTACAGcTCTGGTCTGTTTCCTCTTCTTACCAATGCTGCCATGTCTGTAAAACCAGCTCTCCTGGGCCTATATGAGACCTACTATCTGCCTCTGGGAAAAACTCTCAAACCAGGattgcaggggttgttgactGGAGTGCTCCCAGGTTTAGAGGAAGGCTCAGAGTACTATGACAGAACAAACACCTTGCTGGAGAAAGTGGCCTCGGCAGTGGAGCAGTCTGCTTTCTACAGCGCCCTGTGGGGCAGCATCCTGACCAGCCCAGCGGTGCGCCTGCCAGGGATTACATACGTGCTCCTGCATCTCAATCGCAAGCTTTCCATGGAAGACCAGCTGTATATAATCGGCAGTGACATTGAGCTCATGGTTGAAGCTGTGAGCACTTCTGTGCAGGACTCCAGTGTGCTTGTGCAGAGGAGCACGTTGGACCTCATACTGTTCTGTTTCCCATTCCACATGAGTCAGGCCACTCGTCCAGATATGATTCGGATATTGTCCGCAGCACTGCACGTTGTATTGCGCAGGGACATGTCCTTGAACCGCAGACTCTATGCATGGCTTCTTGGCTTTGACAACAATGGCGTGAAAATAGGCCCAAGGAGCACGAGGCACAGCAATCCCGAGGAACACGCCACCTACTACTTTAATACATTCTCCAAGGACATGTTAGTTCAGGCAATGGTGGGAATCCTGCAAGGAAAAGCAATGGGTGGAGAAGAGGAGAGTGTTCTCATGCATGACCTTAAACCCTTCCGTATTTTAATAAGTCTTCTGGATAAACCTGAACTCGGGCCAGCCATTTTGGAAGATGTTCTGATTGAAGTGTTCAGGACTCTGCATTCACAGTGCAAAGCTGAACTCGACTTGCAAACACAGTCTCCCTTCAGTAAGGACCACACACAGTTAAGCAGCAAATTGAGGGAGAATAAGAAAACTGCAGAACTAATTAAGACTGCAAACCTCCTCTTCAACTCCTTTGAGCCGTACTATATGTGGGACTATATCGCCCGCTGGTTTGAAGAGTGCTGCCGGAGGACTCTGAATGCAAGGCTGCAGGCTGGGCCCGGTGGGAACTGTGAGCCTTCTGAACTCTCGCTCATTGAGTTCTGCCTGCTGGTTGACTTCCTGTTGGACATCGTATCATTGGAAACATACATCGAGATCCAGACGGAGCACCTGCCCCAGCTGCTGTTGCGGATGGTGTCGGCCCTGACTAGCCATCTCCAAGCCCTGGGTCTGGCAGAGCTGACCGACTGTCTGCGGCTCTGCTCCAAGATACTCAGCAAAGTGCAGCCGCCCTTGGTGTCTCCTGGAGCCGAGGGCAGCTTGCAGTTCTCCGTGGGGAAGGCTAGCTCAGTCGgagagaaggaagagaaaaagCTCTTCCCTGCCGCTCTGGAGAGCACCAGCGAGGTGTTCGAAGACAGCGAGAACCCCCCCAGCAGTCGCTCCTCCGAAAGCGGCTTCACCGAGTTCGTGCAGTATCAGGCCGAGAAGAACGAGGACCTCGACCACACTGCGGGGAACTGCCAGGGCCAGCACGGGGCTCTGCCGGTGGGGAGCACCTCCTCCGAGACCGAGACAGCCTCCACGGTGGGCTCTGAGGACACCGTCGTGCACCCGTCTCCCACCATGGGCCACGCCTCGTCGGCCCGCGGGGGCAAAGCCAAGCAGAAGACGGTGATGCAGTGCTGCCTGGAGTACTTCCAGCAGTTCCTCACCCGCCTCGTCACGCTGTACATCACACCCTGCACGGCTGCCTCCCCCGCCTTCACCAGTGAGTTCTGCAGCGTGCTGAAGGGCGACCAGGCTGTGAGGGGGGAGGTGGTGCGGGCCGGAGAGCCGGCACCCAAGAGCAGGGCCAGCTCCCGCTCGGCCCAGAGGGAGTGCCTGGGGGCCTTCACCGCCGCCTGCCAGCTTTTCCTGGAGTGTTCGAGCTTCCCTGTCTACATCGCCGAGGGCAATCTGAAGTCCTCGCCTCAGGCCGAGACACAGCAAGACTATGAGCAGGTCAAGCCTCCCGTGTGGCTCCAGACTCTCATGGATGCCTGCTGCTTCGCCAGTGAGTTCAGTATCCAGGCGGTTGCCATCTCTCTGGTGATGGACTTGGTGGGGCTCACGCAGTCGGTCGCAATGGTAGCTGGGGAGAACGTGGGCAGCCTCGACACAGCCCAGCCCATGAGCCCGAGCCAGGGGAGGGTGGCGGTAGTGATCAGGCCCCCGCTCACCCAGGGCATCCTGCGATTCATCGCTGAAAAGACTGAGTTTTTCAAGCACATTGCACTGACTTTGTGGAACCAGCTGGGCGAAGGAACCCCACAGCACCATCAGAGGAGTGTGGAGCTCTTCTATCAGCTGCACAATATGGTCCCTTCTTCCAGCATCTGTGAGGATGTCATTAGTCAGCAGCTGATGCACAGAGACAAGAAAATCCGGTTAGAGGCACATGTGAAGTTCTCTGTACTGTGGCACCTCACCCGGGACCTGAACATCGCCAAATCTTCCCCTTTCAATCGCACTTTCGACAGGTCCCTGTTCATCATGCTGGACAGTCTGAGCAGCTGGGATGCCTCCACCTGCTCTGTGGGCCAGGCTTGGCTTAACCAGGTGTTGCAGAGACATGACATCGCCAGGTTACTGGAAcccctgctgctgctcctgctccaTCCCAAAACGCACCGCGTGTCCGTGCAGCGAGTCCAGGCCGAACGCCACTGGAGCAGAGCCCGGGGCCCCCATGAGGAGGAGGACAGCGTGGCCGGCTACGCCAGGCCTTCCGACTTCATAGACAACTTCAGTCAGATGCCCATTGAAAACGGGAAGGCAGGGGCTGTGAGGGAGAGCCACGGAAGACTCCTCACTCTGGAGGAGATTGAGCACTTCAGCCTGACTGTGAATCCCCTTAGTGACAGCCTGTCTCTGCTCAGCACCAGCAGTGAAAACCTCCAGCTGGCAGTGGCAGACTTTGACCTGCCTGACCAGCAGATGGAGATCCTCCAGAGCTCTGAGTCAGGAGGTTCCCATTCCTCCACAGTGGACAATACCAGCTTTGAGGAGCCAGACGGCATCAACCCTACAGGGACACCTGATAACTCGCAAGTCTCCGTACTGGAGGAGTCAATAGACGTTGTTGTTCCACAGGTGGTGTTTGAGCTGGTCGACAGAGTAACCAAGATTGTTGAGGAAGGTTCAAAGTGTCAAGTGGTATGGAGTCATGGAGACTCTGACAGCTCCAGCTCAGAAAGTTCTTCAGCCCCACCAGGGTTGGATGCTTATTATGACCTGACGCAAAGTAAAAACGCTGCCTTCAAAGAAAGAGTTCCTGACTCTGAAGCTAATGGAACTCCTGAGTTTCTTTCTGTGACCTCAGACACTGGAGACGAGGAACCTCCTGACATGATCACCAGACACAGCTCTTCACCTTCCATCGTCACCATCCCAGATGCCACCCCTGAACCCGGCCTACAAGTTGAAGACCCACAATCGCGTAAGAGAAGCCAGAGCAGTATCCAGCTCAGCCTTAAGGGAAAGATCATGGAGAAGCTAGTGGACAAATCGCCAGGTGCCAAGCCCAAGGTCAAGAGCAGcaagaaaaaagaagagaagaagaaagctCAAGCAGAAAAGGCCAAGCAGCCCAACATCTTCTTTGGAGATAGCTTAGACCTAGAGAACTGGTACAGCTGTGGAGAGGGGGAGGTTTCAGAGATTGAGAGTGATGTTGGCTCCCCAGGAGTGCGGCGATCTGCCACACCCCCAAGATTCAACATTCACCCCCTCTATCAGCATGTCCTGCTTTACCTTCAGCTGTACGACTCCTCCCGTGCTCTTCATGCTCTCTCGGCCATCACTGCCATGCTGAAGGCAAGTCCCACCGGCTTCGTCAGTGCCATCTCCACGACCAGCATCAACAACACCTACACTCCTCAGCTGTCCCTCCTGCAGAACCTGCTGGCCCGCCACCGCATCTCCGTTATGGGGAAAGACTTCTACAGCCACATACCCATAGACTCTCACAACCACTCCTTCCGCAGCTCTATGTTCATCGAGATCATTATCTCACTGTGCCTGTACTTCCTGCGCAGCTACTACTCCACACACGTGCCCGCCTTGCAGCAGGACCTCTCGGGCAACCGCAACATGCAGATGATGAGCATCGAGGTCCTGATGCTGCTTTTCACTGAGCTCACCAAAGTCACAGAGGGATCGGCCAAGGGCTTTGCCAGCTTCATCTCAGACATGCTGTCAAAGTGCAAGGTTCAGAAGGTGATCCTTCACTGCCTCCTGTCCTCCATCTTCAGCGCCCAGAAATGGCACAGCGAGAGGGTGGCAGGCAGAAACATAGCAGCCGTCGAAGAGGGCCTGTCCGAAGACAGCATCATCAACTTCTCAGAGGACGAGATTGACAACTGCAGTACGGTCCAGTCGCAGCTGCTGCGTCTCCTGCAGAGCCTCATCATCCTGGAGCACAGGGTCATGGTCCATCCAGAGGAGGCTGAAGCTGGCTACGAGTTCATCAGCACAGAGGTGGAGCACATCAGCCCCCAGCAGCCCATGACTTCCCTTCAGTATTTACACTCCCAGCCCATTACCTCGCAAGGCATGTTCCTCTGTGCTGTAATCAGGGCGCTGCATCAGCATTACACCTGCAAGATGCACCCACAGTGGATCACCTTGATCACTGCTACCTTGCCCTATATGGGGAAACTGTTAAGGAGGGTCGTCGCATCAGTCACCATGCAGCTGTGTCGTAACCTAGACAACTTAATCCAGCAGTACAGATACGAGACGGGTTTATCACAAAACAGACCTCTATGGGTGGCTTTATGTATTCCACCAGACATGATTCTGACCGTTTTGGAGGGAATGACCACTATTATTCATTATTGCCTTCTAGACCCATCTTCTCAGTACCATCAATAGCCCTGGCGTCATCAATCTCTCTTGGTGTGGCAGCTATTGGTAAACGTGGACCAGAAGCACCTGTCAGAAGCTCGCACTGGGATCCTGTCCATCCTGCACACCATCATGTCATCCGTGACTCTCCTCTGGAGCGTCCTGTACCTGGCTGACAGCACCGACCGGCCAGCCGTGGCCTCGGCCTCCACCACTACTACCATCAACCTGGGCTCCACCAAGAACCTCAGACAGCAGATTCTGGAGCTGCTGGGCCCCATTTCCATGAACCACGGGGCTCACTTCATGGCAGCTATTGCGTATGTGTGGAACGAAAGGAAGCATGGCAAGAACCCCTCGCGCAATAAAGTCATCCCCACAGCCAGTGAAGAACAGCTCCTTCTAGTGGAGCTAGTGCGCTCCATCAGTGCAATGAGAACAGAGACGGTGATGCAGACTGTGAAAGAGGTTTTAAAGCAGCCACCAGCTATAGCCAAGGATAAGAAACACTTGTCCCTGGAAGTCTGCATGTTGCAGTTTTTCTATGCGTATGTCCAAAGGATACCTGTGTCAAACCTGGTGGACAGCTGGCCATCCTTGCTCTCTTTACTCAAAGAATCTGTGCAGCTTGGGCTTCCCTCCCCGGGACAGTTTCTTATACTCGGaatccTGAATGAGTTTATCTTGAAGAACCCCAATTTAGAAAATAAGAAGGACCAACGTGAACTGCAGGATGTGACACACAAAATAGTTGAGGCTATTGGAAATATTGCTGGCTCTTCCTTGGAGCAAACCACTTGGCTGAGGAGGAACCTGGAAGTAAAGGCCTCCCCTCAGATTGTAGTAGATGGAGCTAGCCTGGAAACGGACGTGGAAGATCTGATGCTCACAGTGATGGAGGCCTCCAGCTTCACTCCATCTCTGTACAGTGTCCACGCGTTGACTTTGCTTTCTGAGGTTTTGGCTCACCTCCTGGACATGGTGTTTTACAGTGATGAGAAGGAGAGGGTTATTCCACTCCTGGTCAACATCATGCACTACGTTGTGCCCTACCTCCGCAACCACAGTGCCCATAATGCCCCCAGCTATCGTGCATGTGTGCAGTTGCTGAGCAGCCTGAGTGGCTATCAGTACACAAGGAGGGCTTGGAAGAAGGAGGCCTTTGATCTCTTCATGGACCATACATTCTTCCAGATGGACTGCTCTTGTGTCAGCCACTGGAGAGCCATAATGGACCACTTGATGACGCATGACAAAACTACATTCCGAGACCTGATGACACGGGTGGCCGTGGCTCAGAGCAGCTCCCTCAACCTGTTCACGAATCGCGATGCTGAGCTGGAGCAGAGAGCCATGCTCCTCAAGAGACTGGCTTTCACCATCTTCAGCAGCGAGGTGGACCAGTACCAGAAGTACCTCCCAGACATCCAGGAGCGCTTAGTGGAGAGCCTCCGCCTGCCCCAGGTCCCGACGCTCCACGCACAGGTGTTCCTGTTTTTCCGGGTCCTGCTCCTGCGAATGTCTCCACAGCACCTGACCTCCCTGTGGCCCACAATGATCACAGAGCTGGTCCAGGTGTTTTTACTCATGGAACAGGAACTCACAGCTGATGAAGACATTTCAAGGATTGCTGGCCCCTCAGTTGCAGGCTTGGAAACCACTTACACAGGGGGGAATGGATTTTCCACTTCCTACAACAGCCAGCGCTGGCTCAACCTCTACCTCTCTGCCTGCAAGTTCCTTGATTTGGCCCTGGCTTTGCCTTCTGAAAGCCTGCCTCAATTCCAGATGTATCGGTGGGCTTTCATTCCCGAGGCATCCGATGACTCTGGGTTGGAGGTCCGCAGACAGGGAACTCACCAAAGGGAATTCAAGCCCTATGTGGTTCGCCTAGCAAAACTGTTAAGGAAGAGAGCAAAGaaaaacccCGAGGAGGACTGCACGGCTAGGGTCATAGCCTGGGAGCCGGGCCACCTGCTGCTGACTCTGTACACAATCCGCAGCATGGAGCAGCTCCTGCCCTTCTTCAACGTGCTCAGCCAGGTGTTCAACAGCAAGGTGACGAGCCGCTCTGCGGGACACTCAGGGAGCCCTGTCCTCAACACCAACGCTTTCCCCAGCAAGGACATCAAGCTGGAGAGCCAGAAAGTGTTCTGGAGCAAAGCCAGGCAGAACATCGAGGAGATGGTGGAGAAGGACTTCCTCGAAGGACTGATTAAAACATAAGTGAACTGAATGATGGCACTGATCGATTACTgaagaaacaaatgaatgaacaaaataaaaaaaaggaaatttgtaaatgtcattttgtatttataatgaacacattttacatttaaaagctgtatgtatttaatttaaataattttatttgtatatatggaACAACTGTGAAGGCTGACTAAATTATAACTGTCTGGCTTTGGTTTATTCCTTGGCCTGTGTATACATGACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004003 True 8041 mRNA 0.53 37 29082093 29108404

Neighbor

gene id symbol gene type direction distance location
AMCG00003999 NA coding upstream 330095 28731909 ~ 28751998 (+)
AMCG00003998 LOC105908890,LOC105419921 coding upstream 351060 28717782 ~ 28731033 (+)
AMCG00003994 NA coding upstream 383326 28689888 ~ 28698767 (+)
AMCG00003992 rnf146,LOC107735261 coding upstream 490500 28587831 ~ 28591593 (+)
AMCG00003989 NA coding upstream 702920 28373146 ~ 28379173 (+)
AMCG00004009 NA coding downstream 34358 29142762 ~ 29184704 (+)
AMCG00004007 me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750 coding downstream 151556 29259960 ~ 29265240 (+)
AMCG00004008 me1,LOC106583951,LOC106605032 coding downstream 196800 29305204 ~ 29321613 (+)
AMCG00004010 NA coding downstream 272179 29380583 ~ 29391128 (+)
AMCG00004016 NA coding downstream 452945 29561349 ~ 29564564 (+)
G5005 NA non-coding upstream 129028 28952553 ~ 28953065 (+)
G4981 NA non-coding upstream 189062 28892684 ~ 28893031 (+)
G4917 NA non-coding upstream 613149 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 976386 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 1304434 27777290 ~ 27777659 (+)
G5085 NA non-coding downstream 246117 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 575823 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 589263 29697667 ~ 29699224 (+)
G5185 NA non-coding downstream 1000437 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 1013691 30122095 ~ 30123181 (+)
AMCG00003993 NA other upstream 398112 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 496419 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 616447 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 682352 28379811 ~ 28399741 (+)
G4831 NA other upstream 978882 28062363 ~ 28103211 (+)
AMCG00004011 ccnc other downstream 419010 29527414 ~ 29541358 (+)
G5245 NA other downstream 1162806 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1188463 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 1779591 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 3292001 32400405 ~ 32402383 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_10015409_10036875 DOPEY1 coding CI01000027 null 10015141 ~ 10036875 (-)