AMCG00004007 (me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750)


Basic Information

Item Value
gene id AMCG00004007
gene name me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29259960 ~ 29265240 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004007
GGAATGGCATTTTCCTTGGAGGAGAGGCTACAGCTGGGAATCCATGGCCTGCTTCCACCCTGTTTCCTTAGCCAGGATGTGCAAGTGCTGAGAGTACTGAGGAACTATGACATGAAGAAGGACGATCTAGATAGaTATGTGTGTTTAATGGGTCTCCAGGATCGCAATGAGAAACTCTTTTATACAGTCCTAACTTCTGACATACAAAGATTCATGCCAATTGTGTATACTCCCACGGTAGGCCTGGCCTGCCAGCAGTACGGCTTGGCTTTCAGGAGACCA

Function

symbol description
me1 Predicted to enable malate dehydrogenase (decarboxylating) (NADP+) activity. Predicted to be involved in malate metabolic process and pyruvate metabolic process. Predicted to be active in mitochondrion. Orthologous to human ME1 (malic enzyme 1).

NR:

description
PREDICTED: NADP-dependent malic enzyme-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004007 True 282 mRNA 0.48 2 29259960 29265240

Neighbor

gene id symbol gene type direction distance location
AMCG00004009 NA coding upstream 75256 29142762 ~ 29184704 (+)
AMCG00004003 NA coding upstream 151556 29082093 ~ 29108404 (+)
AMCG00003999 NA coding upstream 507962 28731909 ~ 28751998 (+)
AMCG00003998 LOC105908890,LOC105419921 coding upstream 528927 28717782 ~ 28731033 (+)
AMCG00003994 NA coding upstream 561193 28689888 ~ 28698767 (+)
AMCG00004008 me1,LOC106583951,LOC106605032 coding downstream 39964 29305204 ~ 29321613 (+)
AMCG00004010 NA coding downstream 115343 29380583 ~ 29391128 (+)
AMCG00004016 NA coding downstream 296109 29561349 ~ 29564564 (+)
AMCG00004014 NA coding downstream 315862 29581102 ~ 29587151 (+)
AMCG00004017 NA coding downstream 326363 29591603 ~ 29598227 (+)
G5005 NA non-coding upstream 306895 28952553 ~ 28953065 (+)
G4981 NA non-coding upstream 366929 28892684 ~ 28893031 (+)
G4917 NA non-coding upstream 791016 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 1154253 28104210 ~ 28105707 (+)
G4808 NA non-coding upstream 1482301 27777290 ~ 27777659 (+)
G5085 NA non-coding downstream 89281 29354521 ~ 29361679 (+)
G5129 NA non-coding downstream 418987 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 432427 29697667 ~ 29699224 (+)
G5185 NA non-coding downstream 843601 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 856855 30122095 ~ 30123181 (+)
AMCG00003993 NA other upstream 575979 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 674286 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 794314 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 860219 28379811 ~ 28399741 (+)
G4831 NA other upstream 1156749 28062363 ~ 28103211 (+)
AMCG00004011 ccnc other downstream 262174 29527414 ~ 29541358 (+)
G5245 NA other downstream 1005970 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 1031627 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 1622755 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 3135165 32400405 ~ 32402383 (+)

Expression


Co-expression Network