Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004016 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 29561349 ~ 29564564 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0004843 | thiol-dependent ubiquitin-specific protease activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004016 | True | 387 | mRNA | 0.42 | 4 | 29561349 | 29564564 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004010 | NA | coding | upstream | 170221 | 29380583 ~ 29391128 (+) |
| AMCG00004008 | me1,LOC106583951,LOC106605032 | coding | upstream | 239736 | 29305204 ~ 29321613 (+) |
| AMCG00004007 | me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750 | coding | upstream | 296109 | 29259960 ~ 29265240 (+) |
| AMCG00004009 | NA | coding | upstream | 376645 | 29142762 ~ 29184704 (+) |
| AMCG00004003 | NA | coding | upstream | 452945 | 29082093 ~ 29108404 (+) |
| AMCG00004014 | NA | coding | downstream | 16538 | 29581102 ~ 29587151 (+) |
| AMCG00004017 | NA | coding | downstream | 27039 | 29591603 ~ 29598227 (+) |
| AMCG00004015 | NA | coding | downstream | 35997 | 29600561 ~ 29611530 (+) |
| AMCG00004012 | NA | coding | downstream | 48625 | 29613189 ~ 29626518 (+) |
| AMCG00004013 | NA | coding | downstream | 99239 | 29663803 ~ 29681594 (+) |
| G5085 | NA | non-coding | upstream | 199670 | 29354521 ~ 29361679 (+) |
| G5005 | NA | non-coding | upstream | 608284 | 28952553 ~ 28953065 (+) |
| G4981 | NA | non-coding | upstream | 668318 | 28892684 ~ 28893031 (+) |
| G4917 | NA | non-coding | upstream | 1092405 | 28466917 ~ 28468944 (+) |
| G4837 | NA | non-coding | upstream | 1455642 | 28104210 ~ 28105707 (+) |
| G5129 | NA | non-coding | downstream | 119663 | 29684227 ~ 29685543 (+) |
| G5141 | pou3f2,LOC106584047,LOC106605033 | non-coding | downstream | 133103 | 29697667 ~ 29699224 (+) |
| G5185 | NA | non-coding | downstream | 544277 | 30108841 ~ 30109040 (+) |
| G5191 | NA | non-coding | downstream | 557531 | 30122095 ~ 30123181 (+) |
| G5198 | NA | non-coding | downstream | 581291 | 30145855 ~ 30146557 (+) |
| AMCG00004011 | ccnc | other | upstream | 19991 | 29527414 ~ 29541358 (+) |
| AMCG00003993 | NA | other | upstream | 877368 | 28640174 ~ 28683981 (+) |
| AMCG00003991 | NA | other | upstream | 975675 | 28568184 ~ 28585674 (+) |
| AMCG00003990 | NA | other | upstream | 1095703 | 28454419 ~ 28465646 (+) |
| AMCG00003988 | NA | other | upstream | 1161608 | 28379811 ~ 28399741 (+) |
| G5245 | NA | other | downstream | 706646 | 30271210 ~ 30271524 (+) |
| AMCG00004039 | NA | other | downstream | 732303 | 30296867 ~ 30307175 (+) |
| AMCG00004056 | ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 | other | downstream | 1323431 | 30887995 ~ 30894827 (+) |
| AMCG00004079 | NA | other | downstream | 2835841 | 32400405 ~ 32402383 (+) |
| G5642 | NA | other | downstream | 3565556 | 33130120 ~ 33131186 (+) |
