AMCG00004017


Basic Information

Item Value
gene id AMCG00004017
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29591603 ~ 29598227 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004017
CACAGAGCGATCCTTCCCTCATTTTCTCCCCGGACTTCCTCTTCCCCCCCAGAGCTTCCGGTTCCGGGTTGGAAGCCAAGGCGCCATATTGTCTGCGAGGCGGAGAAGAAGCAGCTGAGGAGAGAGGAGCTGGGCGAAATAAAGACCCAGACTTGTGAACTTTATGATCGGACATGTGGGATCAGGGTGGTCAGCCGTGGCCGCACTGGCCTTTGAGCCAGCAACAGTGGATGCAATCTTTCCAGCACCAGCAAGACCCAGgCCAGGTTGACTGGGCAGCTCTGGCACAGGCCTGGATTGCTCAGAGAGAAGCGACTGGACAGACTGTACTGGATCAGCCGGGACTGCAACCCAATGGCCAGGAAATCCAGCCGTTAGATACTGGTCCGAACAATCATGGGACCTTTCAGAATGATCCAAATTTCAACAGGATGTGGCAGCCAgACTGGGGAATGCACAACCAGCCTCCCCACCCACCCCCTGAGCAGCCGTGGATCCCCCCAGGCCCCGGGCCCATGGATGCTGTGCCTCCGTCTGAAGACAGCAACAGCCAGGACAGCATTGAGTTCACTCCAGACTCCAGACATGGCATGTTCAATCAGAATAACCACACCTTCGGCGGGCAGCCTGAGAGCTTCCCGATGGCTCCGATGCCTGTGAACCAGTTTGATTATCAGCATGGAGCTGCTGCTTTTGGTCCCCCCTCCTCGGGATTTCACCCTCCTTATTGGCAGCAGGGACCCCCACAGAACCGCAGAGACAGACCCCCCTCGTTCAGGGAGCGACAGAGGTCTCCTATACAGCTACCAGTGAAACAGGAGCCCCCTGCCCTGGGcaagtATGCTGTGAAACGAAGGACACTCCCTGCATGGATTCGGGAGGGTCTGGAAAAGATGGAGcgggaaaaacagaaaaaactggagaaagagagaatggAAAAGCAACGTGCCGAGATGGCGAAAGATGAGAAGAAAATCAACGATTTGCCAGAAGAGGAAGGCGATGGACCCCGACTGCCGCGGAAAAGTAAATTTGACAGCGAtgacgaggaagaggaggaagacgaCGAGAGGACGGAAATGAGAAAACCCGAGCCGGAAACGAGGAGTCCGTCCCCGGTTCACGAAGAGCAGAGTGAAGCAGAAATGACTGACGAGGAGAGAGAATTCCAGCTGATGATGTTGACTAAAATGCTCCTGACAGAAGTGCTTTTAGAGGTCACCAATGAAGAAATCTATAATGTCGCAAAAGATGTGCATCGCAAGGCAACTAAAGCTCCTGCAAAGCAGCTGGCACAGTCCAGTGCACTGGCTTCTCTAACTGGTCTCGGTGGGCTGGGTGAGTACGGTTCAGATGACAGTGAAGACGAGAGGAGCGTCAGAGGCTCAGAGTCGTCCGACACAGACGATGAGGAGCTGCGGCACAGAATCCGCCAAAAGCTGGACGCCTTCCGGAGGAAAGAGAAGGAGATGCAACTGCTTCAGGAGAGGCAGATACTGGACGGTGCGGTACGGCAGCGTAGCCGCAGCAAGAGTGCACGCAGGCAGAGGAGGGAGCCCAGCAAAGAGAAAGGCAGGGACAGGAGGAGAGCCAGCAGGAACAGGAGTGCAGagaggaacaggaggaggaaCCGCAGCCGCTCCCGAGAGCGGAGGAGCAGCAGGGAGAGACGCAAGAGCAGGTCGAAGGATAGGGCCCGGGCCAGCCGCAGCAGGAGCAGGGACAGGCGGCGCAGTAACGACAGGAGGAGGAGCCACAGCCGCAGTAGACGCAAACAGAAGGAGATCAGCAAAGAGAGGGAAAAGAGGAAGGACAGGAGCCGGAGTAATgataaagacaaaaagaaaaaagagagagagacagacaggaagaagGACAGGCAAAAAACCAAAGACAGGGAAAAAAGAGAGGATAAAGATTACAAATCAGCAGGCCAGGATGAGGGTAGCagcaaaaagagaaagaaggagaacGAACACACAGACTCTCACAGCGAGTCGTTCAGTAGGCTCTCGCGGCAGGACAGCAGGACAGGCAAGAAAAGCTCGGTGAAAAATAGTAAAAAGTACTCCGATTCAGAGTCTAGCAGGAGCAGTTCTCGATCCCCAGAGGTTAGCAAGGAAAAGAAGTCTAAGAAATCCAAGCGTAGTCGTTCAAGATCAACGGAAAAATCTCACAAGTCTGGTAAGAAGGCAAGCCGCAAACACAAGTCTAAGTCACGATCAAGGTAG

Function

GO: NA

KEGG:

id description
K13170 PNISR, SFRS18; arginine/serine-rich protein PNISR

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004017 True 2231 mRNA 0.54 11 29591603 29598227

Neighbor

gene id symbol gene type direction distance location
AMCG00004014 NA coding upstream 4452 29581102 ~ 29587151 (+)
AMCG00004016 NA coding upstream 27039 29561349 ~ 29564564 (+)
AMCG00004010 NA coding upstream 200475 29380583 ~ 29391128 (+)
AMCG00004008 me1,LOC106583951,LOC106605032 coding upstream 269990 29305204 ~ 29321613 (+)
AMCG00004007 me1,LOC107597132,LOC107704946,LOC107587764,LOC107716854,LOC107730934,LOC107700750 coding upstream 326363 29259960 ~ 29265240 (+)
AMCG00004015 NA coding downstream 2334 29600561 ~ 29611530 (+)
AMCG00004012 NA coding downstream 14962 29613189 ~ 29626518 (+)
AMCG00004013 NA coding downstream 65576 29663803 ~ 29681594 (+)
AMCG00004023 NA coding downstream 385386 29983613 ~ 29998684 (+)
AMCG00004027 NA coding downstream 496075 30094302 ~ 30097720 (+)
G5085 NA non-coding upstream 229924 29354521 ~ 29361679 (+)
G5005 NA non-coding upstream 638538 28952553 ~ 28953065 (+)
G4981 NA non-coding upstream 698572 28892684 ~ 28893031 (+)
G4917 NA non-coding upstream 1122659 28466917 ~ 28468944 (+)
G4837 NA non-coding upstream 1485896 28104210 ~ 28105707 (+)
G5129 NA non-coding downstream 86000 29684227 ~ 29685543 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding downstream 99440 29697667 ~ 29699224 (+)
G5185 NA non-coding downstream 510614 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 523868 30122095 ~ 30123181 (+)
G5198 NA non-coding downstream 547628 30145855 ~ 30146557 (+)
AMCG00004011 ccnc other upstream 50245 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 907622 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1005929 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1125957 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1191862 28379811 ~ 28399741 (+)
G5245 NA other downstream 672983 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 698640 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 1289768 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2802178 32400405 ~ 32402383 (+)
G5642 NA other downstream 3531893 33130120 ~ 33131186 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G115718 NA non-coding NC_056714.1 CM032083.1 23572973 ~ 23576648 (+)
mexican tetra (Astyanax mexicanus) G126504 NA non-coding NC_035910.1 CM008313.1 31349879 ~ 31352148 (-)