AMCG00004023


Basic Information

Item Value
gene id AMCG00004023
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 29983613 ~ 29998684 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004023
ATGCGAACCTCCTCGCCTTTCCCTTCAGCGCGGCCCTGCGCACTGGGGTCAAAGACACGCGGAGAACTTTCAGCCAATGGGCGACGAGCTGCAGCGAGCGCGCATGCGTCACAGGCCTGGTTTGTGGCGCGGGAGAAAGCAAAACACAAGGAGCGCTTTCGGGTCGTTAGTGAAATGGAGGATGACTTCAGCCCGTCCCTCACCCCGCCCGTGTCGCCCTTCCTGGTGGACAGTGAGTGTGGGGTGACCGCTGTCCGGCCGCCGTGCTTCTGCTGCGGGTCCGAGCCGGCCAGGGACGATGGCAGACATTTCTCCGCAGATGGGTACATGACAAGGGGGGCCCTGAAGAGATTGTTATTAAAATTGGATCCCTCGCCAACTGACTATGAAACAGACACTGTGGACATGTTTGGCTTTCCCTGGGTGACAGAGACGGCATTGGTGGAGTCTGCCAAACTCCTCTTCAGCTTGCTCAAGCAGGCTTTACACAGATTGGAAACCCTGGTTCAGGCAAGCTCACATGACTTtgGGCAGGCCAGCAACTTTCATTTTGAAGCTGAGGAAATAAGGCAACATTGTGTGGCATTTATGCAGTATGTCAAAGTCTTCATTTCAAGGTATCTGGAATATTCCAAGGGTATTGATGATGGCCATCTGCACCCATATGAGGAGCTGGAAGTACAGCTGCCATCAGTACTACTGGAGGAGCTGCATGGCATTGTTCTGTACATTGGGCACCTGCGTGATCTGCCCAGCAACATCCAGGGGGCTTTTACTATAAACCACCAAGGAAAGttaTTCTCTCCATCCTGGCATTTGTTGCACCTTCATCTTGATATCCACTGGTCAGTCCTGGAAATTCTTCATTTGCTTGGAGAGAAGGTGATGGGTCAGGTAGTTTATGCACACCAGTTTATGAATTTAACTGGAGAGAACCTTACCAACATCAGCCTGTTTGAGGAGCACTGTACAAACCTTCTGTGTGACCTCATTGGCCTGGCCTTGAACAAGTACAATAAGaataATGCCTTTACCATCCCGTGGCTGGGGCTGAAGGGTCTGGGGAGTGTGAGCAAGACCCCCTTCTCTATGCTGGAGTTGGTGAAGAGCTGCTGCAGTGAAGAGCAGAGCCCCGAGCTCTACACGACCTCCAGCAGTTTCCAGATCTTCCTGCGCATCCTGGCGCTCCAGATGAGGAAAGATATGAATGGAACGCATCCATGGAAACAGATCAAAGGGAGGGTATACTCCAAGTTCCACCAGCGGAAGATGCAGGAGCTGAGTGAAGCAGGCCTCATGAACTTCCTGAGCCTGTTCTTGGTGCTGGCAGCCACAGCGGATGTAGAGGATGTGGTTAGCCGGGTTTGTGACCTGCTGGCCCTGCTGAGCCCCAGCTCCATTTCCACAGCTCAGAGGGCCCTCGTGTGGAGAGGCcagtttgcttttattctgcTGTACGAGGAGAAAGGACTGGATGTGGCTGTGCTGGCCGACCAGCTCTCCATGGCCTTCCAGCAGGTGGCCAAGGAGTTCTACCTGAAGACCACGGACCAAACCCGCAAGCTGACCCTTTGGACCCTTCTCTCCACCTATATTGAGGGGGTCCAGGAGGTATTTGAGACTAGCTCTTATCTCCACCTCTCTGAGGAGAAGCTACTCAACGAAGGCTTCAGTATGTTGTTACCAGCCTGTCGAGAGTCCGAGCTGCACACCACGCTTTTCTTCCTGCAGAGTGTGTTGGCGCAACTGAGGTAA

Function

GO:

id name namespace
GO:0044427 obsolete chromosomal part cellular_component
GO:0005657 replication fork cellular_component
GO:0005694 chromosome cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004023 True 1755 mRNA 0.53 10 29983613 29998684

Neighbor

gene id symbol gene type direction distance location
AMCG00004013 NA coding upstream 302019 29663803 ~ 29681594 (+)
AMCG00004012 NA coding upstream 357095 29613189 ~ 29626518 (+)
AMCG00004015 NA coding upstream 372083 29600561 ~ 29611530 (+)
AMCG00004017 NA coding upstream 385386 29591603 ~ 29598227 (+)
AMCG00004014 NA coding upstream 396462 29581102 ~ 29587151 (+)
AMCG00004027 NA coding downstream 95618 30094302 ~ 30097720 (+)
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding downstream 112402 30111086 ~ 30114969 (+)
AMCG00004026 NA coding downstream 132552 30131236 ~ 30137944 (+)
AMCG00004025 NA coding downstream 158678 30157362 ~ 30167872 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding downstream 202504 30201188 ~ 30202790 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 284389 29697667 ~ 29699224 (+)
G5129 NA non-coding upstream 298070 29684227 ~ 29685543 (+)
G5085 NA non-coding upstream 621934 29354521 ~ 29361679 (+)
G5005 NA non-coding upstream 1030548 28952553 ~ 28953065 (+)
G4981 NA non-coding upstream 1090582 28892684 ~ 28893031 (+)
G5185 NA non-coding downstream 110157 30108841 ~ 30109040 (+)
G5191 NA non-coding downstream 123411 30122095 ~ 30123181 (+)
G5198 NA non-coding downstream 147171 30145855 ~ 30146557 (+)
G5248 NA non-coding downstream 276424 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 546603 30545287 ~ 30545525 (+)
AMCG00004011 ccnc other upstream 442255 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1299632 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1397939 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1517967 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1583872 28379811 ~ 28399741 (+)
G5245 NA other downstream 272526 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 298183 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 889311 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2401721 32400405 ~ 32402383 (+)
G5642 NA other downstream 3131436 33130120 ~ 33131186 (+)

Expression


Co-expression Network