AMCG00004026


Basic Information

Item Value
gene id AMCG00004026
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30131236 ~ 30137944 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004026
ATGGCAGATAAACAAGAAACTTCCAAACTTTTCAAATATAAAGGattcaattttatttccaaTGTGCATGATGAGAAATTTCTGGACACTCTGGAAAACTTTGAAATCCATGAAAGTGACATATGTTCGGTGACTTATCCAAAGTCTGGAACAGTATGgatgcaatacattttatcattaaTGTTTTACAGTGATGAAGTAACAGGAGAAAAAGCTAAAATGACAACTGAGGTTTGTCCTTGGATTGAAGTGTACACGAAAAAATTTGACTACAACAAATTCCCATCCCAACgtttatttgtttcacactTGCCCTGGGATCTGATCCCAGACGGCCTGAGAAAAAGAGGGAAGgttatatACCTTGCCCGAAATCCCAAAGATGTTGCTGTGTCTTATTACCATTTCCACAAATACATTGCTTGTCTGGAAAGTGAAGAGAACTTTGATACGTTTCTGGATAGATTCCTCGAAGGTAACGTTTTTGGAAGCTCATGGTTTGACCACATAAAGGATTGGTATAGTCATAAAGATCAGtttgatttcctgtttctcaCGTATGAGGAAATGAAAAAGGATCTGCGAAGTACTATAGTCAAGATTTCAAACTTTGTGGGCAAAAAGCTTGAGGACAAAACAATTGATATGATCGTAGAAAAAGGAACTTTCAAGAGAATGCAAAACAATCCAATTGCCAATTATAAGAGTCTGTGTAAGATCCATTTGAACAGCAGCGAAGGAACATTTCTTCGAAAagGGACAGTTGGGGactggaaaaatatattcacagtGGCTCAAAACGAGAAGTTCGATGCAATCTACCAGAAGAAAATGGAGGATTTTGGTCTAGATCTTGTTTGGGAAATTTCTGAATAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004026 True 876 mRNA 0.37 6 30131236 30137944

Neighbor

gene id symbol gene type direction distance location
AMCG00004024 rwdd1,LOC107587776,LOC107704860,LOC106579327 coding upstream 16267 30111086 ~ 30114969 (+)
AMCG00004027 NA coding upstream 33516 30094302 ~ 30097720 (+)
AMCG00004023 NA coding upstream 132552 29983613 ~ 29998684 (+)
AMCG00004013 NA coding upstream 449642 29663803 ~ 29681594 (+)
AMCG00004012 NA coding upstream 504718 29613189 ~ 29626518 (+)
AMCG00004025 NA coding downstream 19418 30157362 ~ 30167872 (+)
AMCG00004029 cssa15h12orf57,grcc10,clg18h12orf57,csgr04h12orf57,c7h12orf57,LOC107695984,LOC105901913,LOC103359244 coding downstream 63244 30201188 ~ 30202790 (+)
AMCG00004030 NA coding downstream 88689 30226633 ~ 30229627 (+)
AMCG00004037 NA coding downstream 116426 30254370 ~ 30255135 (+)
AMCG00004028 cmtr1,LOC107682822 coding downstream 120528 30258472 ~ 30270198 (+)
G5191 NA non-coding upstream 8055 30122095 ~ 30123181 (+)
G5185 NA non-coding upstream 22196 30108841 ~ 30109040 (+)
G5141 pou3f2,LOC106584047,LOC106605033 non-coding upstream 432012 29697667 ~ 29699224 (+)
G5129 NA non-coding upstream 445693 29684227 ~ 29685543 (+)
G5085 NA non-coding upstream 769557 29354521 ~ 29361679 (+)
G5198 NA non-coding downstream 7911 30145855 ~ 30146557 (+)
G5248 NA non-coding downstream 137164 30275108 ~ 30276282 (+)
G5271 NA non-coding downstream 407343 30545287 ~ 30545525 (+)
G5272 NA non-coding downstream 415033 30552977 ~ 30553214 (+)
G5291 NA non-coding downstream 602620 30740564 ~ 30740873 (+)
AMCG00004011 ccnc other upstream 589878 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 1447255 28640174 ~ 28683981 (+)
AMCG00003991 NA other upstream 1545562 28568184 ~ 28585674 (+)
AMCG00003990 NA other upstream 1665590 28454419 ~ 28465646 (+)
AMCG00003988 NA other upstream 1731495 28379811 ~ 28399741 (+)
G5245 NA other downstream 133266 30271210 ~ 30271524 (+)
AMCG00004039 NA other downstream 158923 30296867 ~ 30307175 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other downstream 750051 30887995 ~ 30894827 (+)
AMCG00004079 NA other downstream 2262461 32400405 ~ 32402383 (+)
G5642 NA other downstream 2992176 33130120 ~ 33131186 (+)

Expression


Co-expression Network