AMCG00004057


Basic Information

Item Value
gene id AMCG00004057
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30961633 ~ 30969204 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004057
GCGTGAGCGCCGCTGTCACGCTCGCGCCCTGCTGTGCGGTGTTCATTAATCTCTGTGTActtctcatcatcatcatcatcatcatcatcatcagcagcagcagcacgaTTATATCCATTACCAGCGCCTGCTAGATGTCCTCACTTCATTTCGATAACCCGCCCCACATACACGCGTTGGTTGAGAGAGTTTGTCTGTGTTGTTGTACCGGAGTCCGCGGACAGAGACTGCAGACTAGCAGcgCTTACTTCTGGAGGGTGCCCTGTCGTGTGAGTGCCGGGCCCTGGGGGCCCGTGATCGCGGCGGCTGGAGCAGCATGATGAAGCACACCCACAGCTGGTGCCAGACGCCGCCCACAGTCACAGTGCGTGTTCGATCGGCCGCCCCCCGCGTCCTGCAGCTCAGGAGGGGCCTGCGGCTGAAGAGGCCCGTTCTGCAGGAGGGCCACGGCCACCCGGGGAAGAGCCGCGGCAATGAGAACCATGGTGCCACAGGCCATGACGATGCCTCCTCCCAGAACAAGTGCTGCTGGGGCCCCACTCTGGTTATCCAGAGGCAGGAGATGGCTGCCTTCTTCAAGCTGTTCGATGACGACCTTGTCCAGGACTTTCTGTGGATGGACTGCTGTTGCAAAATCTCAGACAAGTACCTGCTGGCCATGACGTTCGTCTATTTCAAGAGGGCTCGCTTCAGCATCAGCGAACACACCCGCATTAACTTCTTCATTGCGCTATACCTGGCAAACACGatggaggaggacgaggaggagagCAAGTATGAGATCTTCCCCTGGGCGCTGGGAAAGGCCTGGAGGAAGCAGTTCTCTGGTGGCGCCCAGCGTCAGTACGACGGGCGGGAGGAAGTACAGCTGCCCCGAGGTCCCTCCGCCTCCCCCGCGCGCTGTGCGCTCTGCACCAGGGGGGAGCGCTTTCTGGACCTGGgggtctcctcctcctcctcctcctcctcctcctcctctccactgcCCTGCACCCTCTCACTGGAGGTGACCCCCCAGGACCATTTCACCTCCTCCGCCACCACTCGGCAAACCTGCAGGAGGAGCCGTGGCGATGGGGCGACCCACTCCCGAAACGCCTCCCCCCGGAGCGCACTGGACAGCGGCTCTGGGCTGAAGGATTCCTCCATGGACTGGTTCAATGAGGAGTGAAGACCGGACCGAATCCCTCACTGGCcactctccctccatccctccttcCCATGATCCCTGCATCCTTTGCAGTGCAGGGTTTTCTTGTCCGATACTATAACATATGTAACTAAACGCTCAGCTCAGTTGACTGTTAGATGAGTAGCATGATTAGAAATACTTtcactgttgttattattgttatttattatattgatgATTATTCACTGTAAGGCCTGTAATGTCCAGGGCCTTTATTTTGTAACCTCTGCACTGAGCACTTAaacattgcatttgcattggCATTTAAACACTTGTATCACATTAACCTCAGACTGGTTCACAAGAGCACTGTCAACAGATCTATATTGTAATACTGCATCATATTTCACAGGTGagcagggaaaataaatggaaagaaaagtgGTACTGATGAATGTCTTGGAAAGCAGAGGGAAGGGTGTGTGGCAGGTTTAGCTCAGGGTCCTGACTGTAACATTGTTTAAGGGTCTTTTATAGTTGATGGTTATAAAAAGCTCTTGATTCAAGGCaccaaaacatgtaaaaaattACAGACTGTAGAGAAGGAATAAATTCACCCTGTTCATTCGCTCAATCAGACCAATTAATTACCTTGATGCTGGGTTGGAACAGAAGACACTGCTCTCCAGGATATGAGTTTGAGAGCTCTGGCATAACTTGGTTTTCATATTTGCATCACTGAAGCAGTTTCACAAATCTGTGCGGTTCTGCAGCTGTAGATTTAGAGGGCTATATTAACGTCCTGGACTGAGGCCCTCCAGGATTTGGCTATCCCAGACTAGACTGTGCTCTCCATTGCTGTAAACTACAGAGTGTGGGTTCACTGCAGTAACTTTGAGCAGGTTGGCTGGTAGGGGTGGGGACTGGTTATGAATTTCCCTTCAacaattatttcagtattatcAGTTATGCTTCTTCTCATCTTCCCCTTAAAAGGAAATCCACAAACCTATGTGAGTCTTTAATAAACG

Function

GO: NA

KEGG:

id description
K08694 SPDY, RINGO; speedy

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004057 True 2163 mRNA 0.52 7 30961633 30969204

Neighbor

gene id symbol gene type direction distance location
AMCG00004064 NA coding upstream 14156 30945472 ~ 30947477 (+)
AMCG00004058 NA coding upstream 33142 30924788 ~ 30928491 (+)
AMCG00004059 NA coding upstream 48482 30897076 ~ 30913151 (+)
AMCG00004051 bpnt1 coding upstream 112597 30842720 ~ 30849036 (+)
AMCG00004049 NA coding upstream 154400 30805091 ~ 30807233 (+)
AMCG00004065 NA coding downstream 5772 30974976 ~ 30990100 (+)
AMCG00004067 NA coding downstream 61214 31030418 ~ 31039737 (+)
AMCG00004066 NA coding downstream 77941 31047145 ~ 31062709 (+)
AMCG00004071 LOC105894840,LOC108443926 coding downstream 401178 31370382 ~ 31371158 (+)
AMCG00004078 NA coding downstream 1336287 32305491 ~ 32329172 (+)
G5297 NA non-coding upstream 183363 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 220760 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 408419 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 416108 30545287 ~ 30545525 (+)
G5248 NA non-coding upstream 685351 30275108 ~ 30276282 (+)
G5417 NA non-coding downstream 23402 30992606 ~ 30992900 (+)
G5482 NA non-coding downstream 817130 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 1059800 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 1222116 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 1299544 32268748 ~ 32269071 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 66806 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 654458 30296867 ~ 30307175 (+)
G5245 NA other upstream 690109 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1420275 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2277652 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 1431201 32400405 ~ 32402383 (+)
G5642 NA other downstream 2160916 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 3883659 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 4783246 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 5058075 36027279 ~ 36045282 (+)

Expression


Co-expression Network