Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00004064 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030121.1 |
| NCBI id | CM030121.1 |
| chromosome length | 57050121 |
| location | 30945472 ~ 30947477 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006424 | glutamyl-tRNA aminoacylation | biological_process |
| GO:0006433 | prolyl-tRNA aminoacylation | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004818 | glutamate-tRNA ligase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004827 | proline-tRNA ligase activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00004064 | True | 1083 | mRNA | 0.59 | 7 | 30945472 | 30947477 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00004058 | NA | coding | upstream | 16981 | 30924788 ~ 30928491 (+) |
| AMCG00004059 | NA | coding | upstream | 32321 | 30897076 ~ 30913151 (+) |
| AMCG00004051 | bpnt1 | coding | upstream | 96436 | 30842720 ~ 30849036 (+) |
| AMCG00004049 | NA | coding | upstream | 138239 | 30805091 ~ 30807233 (+) |
| AMCG00004050 | NA | coding | upstream | 143263 | 30782054 ~ 30802209 (+) |
| AMCG00004057 | NA | coding | downstream | 14156 | 30961633 ~ 30969204 (+) |
| AMCG00004065 | NA | coding | downstream | 27499 | 30974976 ~ 30990100 (+) |
| AMCG00004067 | NA | coding | downstream | 82941 | 31030418 ~ 31039737 (+) |
| AMCG00004066 | NA | coding | downstream | 99668 | 31047145 ~ 31062709 (+) |
| AMCG00004071 | LOC105894840,LOC108443926 | coding | downstream | 422905 | 31370382 ~ 31371158 (+) |
| G5297 | NA | non-coding | upstream | 167202 | 30778047 ~ 30778270 (+) |
| G5291 | NA | non-coding | upstream | 204599 | 30740564 ~ 30740873 (+) |
| G5272 | NA | non-coding | upstream | 392258 | 30552977 ~ 30553214 (+) |
| G5271 | NA | non-coding | upstream | 399947 | 30545287 ~ 30545525 (+) |
| G5248 | NA | non-coding | upstream | 669190 | 30275108 ~ 30276282 (+) |
| G5417 | NA | non-coding | downstream | 45129 | 30992606 ~ 30992900 (+) |
| G5482 | NA | non-coding | downstream | 838857 | 31786334 ~ 31786883 (+) |
| G5490 | NA | non-coding | downstream | 1081527 | 32029004 ~ 32029301 (+) |
| G5493 | NA | non-coding | downstream | 1243843 | 32191320 ~ 32191542 (+) |
| G5499 | NA | non-coding | downstream | 1321271 | 32268748 ~ 32269071 (+) |
| AMCG00004056 | ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 | other | upstream | 50645 | 30887995 ~ 30894827 (+) |
| AMCG00004039 | NA | other | upstream | 638297 | 30296867 ~ 30307175 (+) |
| G5245 | NA | other | upstream | 673948 | 30271210 ~ 30271524 (+) |
| AMCG00004011 | ccnc | other | upstream | 1404114 | 29527414 ~ 29541358 (+) |
| AMCG00003993 | NA | other | upstream | 2261491 | 28640174 ~ 28683981 (+) |
| AMCG00004079 | NA | other | downstream | 1452928 | 32400405 ~ 32402383 (+) |
| G5642 | NA | other | downstream | 2182643 | 33130120 ~ 33131186 (+) |
| AMCG00004138 | fkbp1b | other | downstream | 3905386 | 34852863 ~ 34870320 (+) |
| AMCG00004158 | NA | other | downstream | 4804973 | 35752450 ~ 35766180 (+) |
| AMCG00004160 | LOC106571404,LOC106607809,LOC105897019 | other | downstream | 5079802 | 36027279 ~ 36045282 (+) |
