AMCG00004065


Basic Information

Item Value
gene id AMCG00004065
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 30974976 ~ 30990100 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004065
CTGAACCATAACACGTGTCCGCTGGCTGCGGGGTTGCGTGTTGTGAGCAGACGCAGCGCTACAGCAATGGCGGCCGACGGAGGCAGCTCTTCGCTGGCGTATCCCTGCGCTTTCTCGCTCAAGTCGCGCCAGTACTTGGCCGTGTGCGCACAGGATGGGCGGCTGCGGATCTgggacacacacagcaacactcTGCACCAGGAATACGTGCCTTCAGCCCACCTGAGTGCGACTTGTACTTGCATAGCTTGGGGACCATGCCGGACGGACAAGAGGGCAGACCTGTTGGCTCTGGGCACTGCGGCGGGCAGCGTGCTAATCTACAGCACCGTGAAGGGAGCCTTGCACTGCACACTAgAGGGTGCTCACAGTGGGCAGGTGAACAGTGTGCGGTGGCATCCTGAAGGGGGCGTGCTGTACAGTGGTGCCGAGGACGGCCACATCGCAGAGTGGGACCTGCGGAGCGGGAAGTTGCGCTGTAAGTGGAAGGTGGACCGCAGCGCAGTGAcaagtctgtgtgtcagtccaGATGGCCGGCTGCTGCTGTCAGCTGGGCAGACCATCAAGATGTGGGACCTGGAGACCAAGGAGGTGTACCGGagATTCACAGGACACTCCACAGCCGTGACGACTCTGTGTTTTGCCACCACGCGCCCCCCCGACAGTGACGGCCTCTACTTCCTGTCCGGAGCCGCCCATGACCGGCTGCTCAGTGTGTGGCAGGTGCGTGCAGATGGCAAGGATAAGAACGCAGTGGTGTCCTTCACTCTGACAGACGAGCCGCTGCACATCGACCTCACTGCCTCTGACAGCAAAGACGAGGCGGTGAGGCTGGCAGTGGTGTGTAGAGATGGGCAGCTGCACCTGTTTGAGCACATCCTGAATGGgcaCTGTAAGAAGCCCCTGTCCCCGTCCTGCTCAGTGCAGGTGTCGTCCCCGGGGGCGGTAGGGGTGCCAGGAGGGGACAGTCCGACTCCGGTGCCAGTCCTGGCCACTGCTCTGGGCCAGGAGAAGCAGGCACTGCTGCTGGCATACGGCAACCATACACAGCCCGTCATTGAGCGCACGacggTGAACACTGCAGAACGTCACGTCTGTCTGGTCAGGGACGTCAAGGCTACTCTGACCCTCACAATGGAAACCGCCATCTCAAAGGTGAAGACTCCTGTTGTCAATGCAGATGCCAAAGTCCTCGTGCCTGGACTTCCTGGACACTGTGCGCCAGTCAAGTCTGTCCCTGCAGAAGCCGAAAAGAGGAAACAGAGTTCGAAAACCAAAGAGATGTCCATTGAAGAGCGTCTGGGAGAGATGGATCTGACGGTATCTGCGAGAAAAGGGGGCCCTGTGGGGGCTTCCTCTCTCCAGACAGACAGCTTTGCCGTGCTGCTTGTCCAGGGGCTGGAGAGCAACGACAGCAACATCCTCAATAAAGTTTTGCAGACCAAGAAGGAAGCTTTGATAAAGAAAACAGTTTCCAGATTACCAATCCCTGCCGTCCTGCCATTGGTGGAGGAGCTCACCAAGAGGATGCAGGGCAATCCATACAGTGCTGTGATGATGGTGCGCTGGCTGAAGGCAGTCCTCACACTCCATGCCTCCTATCTGTCCACAgtgCCTGACCTGGTGGGCCAGCTGGGTGTCCTGTACCACCTGATTGAGAGCCGAGTGAAGATGTTCCACAAGCTCACTAGACTGCATGGCAAACTCTACCTGCTGGTCACACAGGTCGCGGCATCGGAGAGGTCACACACCGTCACAGAGCTGGACCTCACCGCCAAACTGGTCTATGAAGAGGATTCTTCAGATGAGGGAGAGGAAGGCTCTGGGGATGAAGGACTGGCCGAGGAAGACTCTGATAATTgggaggaggatgaggaagaaGAGATGGACGAGACATCAGatagagaggaagaggaggagatgaaTGTGGAAACTAAAGTGAACGGTGACTCGGACTTGGAGCCGGAAAACGAGAGCGAGGAAGAAtgagaaggagaggggaggaaaaaCGCAAAACAGAATGGAgaaatttatataattttttttttttcattttcatttcttttggattttattttaagaaaaaaaaacaaccaaccaacacAGTTTTATACAAAGATGAAGATATCTGAATTATGCCTGGGGCAATACCGACAGTTGGCACAGTACCCCAGGGCAGCCTGTAGAGTGGTGCCACTGAACCACACTGAGGACTGGACACTCCCTGTACTGGCCCGAAAATTGACAACTGGGGAGGGGAGGGTGTGGGGGTGTGGTGTGGACTGATCTTGGTGATTTTTTACAGACTGAGGCCCTGCCCTTCCCAGCTCCTCCCTACCCCTGCCCTGTGCGTCAGTTCGGGGAGACTCTTTAGCGCCCCCGTCCTGCCTGCTTTATTGTTTGATATGGGGTTGGGTGGGGGCTCTTGTGCAGGAGGTGGCTGGTAGGTGTTGTGTCCGTCCGTCTTGTCCGATTCTCTGTCTGTGCAGAGCGGTGTTTGTACAGGCTGTTGCTGTTCTAACAGGAGGATGAGACGACTGCAAAATTAAATTCTGTAACCAGA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0060218 hematopoietic stem cell differentiation biological_process
GO:0001570 vasculogenesis biological_process

KEGG:

id description
K14546 UTP5, WDR43; U3 small nucleolar RNA-associated protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004065 True 2563 mRNA 0.56 18 30974976 30990100

Neighbor

gene id symbol gene type direction distance location
AMCG00004057 NA coding upstream 5772 30961633 ~ 30969204 (+)
AMCG00004064 NA coding upstream 27499 30945472 ~ 30947477 (+)
AMCG00004058 NA coding upstream 46485 30924788 ~ 30928491 (+)
AMCG00004059 NA coding upstream 61825 30897076 ~ 30913151 (+)
AMCG00004051 bpnt1 coding upstream 125940 30842720 ~ 30849036 (+)
AMCG00004067 NA coding downstream 40318 31030418 ~ 31039737 (+)
AMCG00004066 NA coding downstream 57045 31047145 ~ 31062709 (+)
AMCG00004071 LOC105894840,LOC108443926 coding downstream 380282 31370382 ~ 31371158 (+)
AMCG00004078 NA coding downstream 1315391 32305491 ~ 32329172 (+)
AMCG00004075 NA coding downstream 1345292 32335392 ~ 32346595 (+)
G5297 NA non-coding upstream 196706 30778047 ~ 30778270 (+)
G5291 NA non-coding upstream 234103 30740564 ~ 30740873 (+)
G5272 NA non-coding upstream 421762 30552977 ~ 30553214 (+)
G5271 NA non-coding upstream 429451 30545287 ~ 30545525 (+)
G5248 NA non-coding upstream 698694 30275108 ~ 30276282 (+)
G5417 NA non-coding downstream 2506 30992606 ~ 30992900 (+)
G5482 NA non-coding downstream 796234 31786334 ~ 31786883 (+)
G5490 NA non-coding downstream 1038904 32029004 ~ 32029301 (+)
G5493 NA non-coding downstream 1201220 32191320 ~ 32191542 (+)
G5499 NA non-coding downstream 1278648 32268748 ~ 32269071 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 80149 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 667801 30296867 ~ 30307175 (+)
G5245 NA other upstream 703452 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 1433618 29527414 ~ 29541358 (+)
AMCG00003993 NA other upstream 2290995 28640174 ~ 28683981 (+)
AMCG00004079 NA other downstream 1410305 32400405 ~ 32402383 (+)
G5642 NA other downstream 2140020 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 3862763 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 4762350 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 5037179 36027279 ~ 36045282 (+)

Expression


Co-expression Network