AMCG00004081 (bre)


Basic Information

Item Value
gene id AMCG00004081
gene name bre
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32499473 ~ 32529839 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004081
GACACAGCTCTGGACCCAGGGGAGGACGTGGCCCTCCTGTCTGTTAGTTTTGAGGATGCAGAGGCTACTCAGGTGTTCCCCAAACTCTACCTGTCCCCCAGCATCGAGCAGGTTCACCTGCTGCCACAGCCCCCAGCCCATTTGCCCAAGGTGCGGCAGTGTGCACTGAGCACAATCTGTAGAGTCAACTCGGGGGCTGTGGATCAGGGTGCACTGGGAGGATCCTCGGCTCTCCATATCCCAGCATTCCCCAGTGGAGGCTGCCTCATTGACTACGTGCCTCAGGTCTGCCAGTTGCTCACAAACAAGGTGCAGTATGTCATCCAGGGCTACCATAAGAGGAGGGAGTACATTGCTGCCTTCCTCAGTCACTTTGGGATGGGTGTTGTGGAGTATGATGCTGAGGGATTCACCAAGTTAACCCTGCTCCTCATGTGGAAGGATTACTGCTTCCTGGTTCATGTTGATCTGCCCCTGTACTTCCCCCGAGACCAGCCTACCCTCACCTTCCAGTCCGTCTACCACTTCACCAGCAGCGGGCAGCTCTACTCTCAGGTGCAGAAGTCCTACCCCTACAGCCCGCGTTGGGATGGCAACGAGATGGCCAAGAGAGCCAAGTAAGACTGCCGCCCACAGGCCCGTCCCCCATGCCCCCATTACATCACCTCAACCAGCGCAACACTGTACACTGTAGACAGCTGCTGTGTCCTGACaacacagggaaagacatggGCTTGTGTGCTTGTAAGTGCCTGTGAGTCTGTGTGCacgggtgtgtctgtgtgtgtgtgcgtgtatgcatgtgtgtgtctgtgacagaGTTGTAGCTTAGAGTGTGTATATAAACCACTAAGcaatgactttaaaaaaaaaaaaaaatgaagtgttcAACATTAAAGTCCACATTGGACCggttaatgtgttttgttttattatttttgatgatgatgatgatcttatatatgttttgtctttattgttaCTATAAATTCATCTAAATAGTTAACAATGCACAATTTAGTGGGGAGTTAGAATCATAAGAGATTAGACTGGGGTCTGCacaatctctctttttttttttttttttccccctctctcctggcACAATCATCTTTCAGGTTCTGTATGATATACCTCCGTAAGACTGTCCCATTTGTAGAAGCTTTAAAGGTGACATGCATGCTTATGAAGGTTGTTAGTTTCCATAGTTTTGATGaatgtacagtacaatatcCTCATGTCTGCTCTGTACAATTGTAGAATTTCTATTCCTGCAGACCCACATTGTTTTGCACAAGCTATTATTACCCTGTACTGCAGTTAGATACTTTGGGATCATGGATCAAGTTCAggtctatttaaaaacaaatcaggacCCTATTGTTAACGTTTGTTAATTGCCACATGCACAACCCAACTCTCTTAGGTCACAACCATTTTCTCCATTACAGTGAAACACATGAACCATAGGATAATGCCATGCAGATCCTAGCTTTGTAGAGAccaaacagcaacagcaagtgAGCAGAGATTTGCAAAGGACAATAGTTCCCCCCCCCAACATTCTCCTGAAAACGGCAAGAgttacatacaatacaataatattaatattgtgaaGCCCATAGCATGTATTCAGAAGAACGGCATTGCGTAACGACAGCGGACAACGAGAGACACACAAGTATTTTTGTGCCTATCGTGGTTTTtgttggggggcaggggggctcGTCATGCTTTGATAATCCAAAGTAAATAGATAACCCACATGCTTAATATTGTCCTCCACAAATTTAGTTCAGATCAGAATTTGGAGTATGTATGCTCTCTTGATGAACTACACTGAAGAGGTCTTCACTGAAAGATGACCTGCACTGATATGCCATTGGTAGCTGAAACAGGTCTTGCCGAATTGTGAGTGCCGATGCCACAGTGAACGCAGCTGTTGTGAACTGTGCCCGTGCCTGTGCAgccacataagaacataacatcATAACCGTGCCATAGAATAAGAGGCAACTTTGGATTTTTACACAGAGCCTAGAAATATGAAACTAGCTTTTAATTGAGGACAAGGACTGTGTGTTTATGCAGCTAAGCAGATgttgtcgtgtgtgtgtgtgtgtgtgtgcatgcatgcgtgtgtgtggggggagtgGTGTGTGCGTGCTTATTTCCATCATTAAGGATGAGGGTCATTGTCAGGGGTCTTGCTTGGCCTTTGGGCCAGCCCTGTGCTATATTTATTGTTCGTAATGCAGGAACTGTCATGTTTAATTGGGAACTAAAGGGTGAATGTAACTGGGGCATTTATTAGCATCAagtcttttaataaaat

Function

symbol description
bre BRCA1-A complex subunit BRE

NR:

description
PREDICTED: BRCA1-A complex subunit BRE isoform X2

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0006915 apoptotic process biological_process
GO:0031572 G2 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0070552 BRISC complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function

KEGG:

id description
K12173 BRE, BRCC45; BRCA1-A complex subunit BRE

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004081 True 2335 mRNA 0.46 7 32499473 32529839

Neighbor

gene id symbol gene type direction distance location
AMCG00004083 bre,LOC104968080 coding upstream 43627 32449407 ~ 32455846 (+)
AMCG00004080 bre coding upstream 70560 32428459 ~ 32428913 (+)
AMCG00004075 NA coding upstream 152878 32335392 ~ 32346595 (+)
AMCG00004078 NA coding upstream 170301 32305491 ~ 32329172 (+)
AMCG00004071 LOC105894840,LOC108443926 coding upstream 1128315 31370382 ~ 31371158 (+)
AMCG00004082 NA coding downstream 29140 32558979 ~ 32559365 (+)
AMCG00004086 NA coding downstream 41740 32571579 ~ 32582699 (+)
AMCG00004084 mocs1 coding downstream 53701 32583540 ~ 32596401 (+)
AMCG00004085 NA coding downstream 68614 32598453 ~ 32600592 (+)
AMCG00004087 kif6 coding downstream 198821 32728660 ~ 32774812 (+)
G5529 NA non-coding upstream 111938 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 115794 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 149370 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 189561 32309505 ~ 32309912 (+)
G5499 NA non-coding upstream 230402 32268748 ~ 32269071 (+)
G5569 NA non-coding downstream 81994 32611833 ~ 32612051 (+)
G5662 NA non-coding downstream 908489 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 943197 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 945003 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 1036334 33566173 ~ 33567479 (+)
AMCG00004079 NA other upstream 97090 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1604646 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2192298 30296867 ~ 30307175 (+)
G5245 NA other upstream 2227949 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 2958115 29527414 ~ 29541358 (+)
G5642 NA other downstream 600281 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 2323024 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 3222611 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3497440 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3731949 36261788 ~ 36278234 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000189_00183881_00277704 BRE, BRE.L coding CI01000189 null 183881 ~ 277704 (+)