AMCG00004087 (kif6)


Basic Information

Item Value
gene id AMCG00004087
gene name kif6
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 32728660 ~ 32774812 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004087
ATGGTTAAACAGACTATCCAGATCTTTGCCCGCGTCAAACCCACCAAGAAAGCCAGCGCGGTCTACTCTGTGGAAGATGATGAGCAAGGAGGCTGCAGCCTGGAGTTCCTGGTCCCCCGGGATCTGGCAGACGGGTTCGTCAATAACAAGAAGGAGAACTACAGGTTCAGGTTTCAAAAAGTTTTTGATCAAGGAGCCCAACAGGATGACATCTTTGAACACATTGCCAAGCCTGTGGCTGACAGTGTGTTGGCGGGGTACAACGGCACCATCTTTGCCTATGGCCAGACGGGCAGCGGGAAGACCTTCACCATCACAGGGGGGCCGGAGCGCTACAGCGACCGTGGCATCGTCCCCCGCACACTCTCCTACCTCTACCACAACTTCAGCATGGACACCAGTAAAGTGTACACCACCCACATTTCCTACCTGGAAATCTACAATGAGTGTGGCTATGACCTGCTGGACCCCAGACACGAGGTCACACGTTTGGAGGACTTGCCGAAAGTCACCATCATGGAAGATCCGGATCAGAACATTCATCTAAAGAATCTGTCAATCCAGAAGGTAGCCAATGAAGAACAGGCTCTCAACTTGCTTTTCCTGGGGGACACCAATCGCATGATTGATGAGACCCCGATGAACATTGCATCCACGCGCTCTCACTGCATCTTCACTGTGCACGTGACCAGTCGGGAGCCGGATTCCTCCACGGTGTGCCGCTCCAAACTGCACCTGGTGGACTTGGCTGGCTCTGAGCGCGTTGGCAAGACTGGGGTGGGAGGGCAACTCCTCACCGAAGCCAAGTACATCAACCTGTCCTTACACTACCTGGAGCAGGTGATCATCGCTCTGTCGGAGAAGAATCGCTCCCATATCCCATACCGCAACTCCATGATGACCTCGGTGCTGCGGGACAGCCTGGGCGGCAACTGCATGACCACCATGATCGCCACGGTGTCGGTGGAAAGGAGGAACCTTGACGAGTCCATCTCCACCTGTCGATTTGCACAGAGAGTGGCACTTATCAAGAATGAAGCCCTTCTCAACGAGGAGCTGGACACAGGACTGTTGATTGTGAAGTTGAAGAGGGAGATCCAGGCCCTGAGAGAGGAGCTGGCCATGGTGACCGGGGAGCAGAGGGCTGACCAGCTCACAGACGATGAGATCCACAAGCTGGATGAGCAGCTTCAGCTATTCCTGAAGGACCCAGAACCCGATGCCACCCTTGACCTGGGGGCCGACATGCGCAAGATCCGTCACTGCTTCCAACTGCTCAAGGTGATGGTGACCGAGAGGAGGTCCAGTCAGGGTGGAAGGGACCAGCAtccctctcccccacccctgGGAGACCAAGAGGACTTGGACAGACCCATGCCTGAGGAGCTGAGGAGACTGAGAGAGCTGCTCCagcagagagacaaagagatctcgATCCTAGTGACCATGctgaagaaagagaagaggagggTCCAGGATGTATCAGCCCAGCTGGCTGTCCTCTCCAATGGCGAGTTGCTTTCCCAGAGTTCCTTGCGTTCCTCGGGGGTGGAGCTCGCAGACAGGTCAGGGGGGTCACCCAGTCTGAGCCAGAGCAGGGGCAGCCTCTCCTCGGACAGCACTCCCCCCGAGCCGGTGCACAGATGGAGAGttgtaTCAAAAGTACAACAAAGGAAgaatatacaaaacattagCCTTTTTTCATGTCCACGTCTGAAGGTTTGA

Function

symbol description
kif6 Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within spinal cord development. Located in ciliary base. Is expressed in brain; intestine; ovary; and testis. Used to study idiopathic scoliosis. Orthologous to human KIF6 (kinesin family member 6).

NR:

description
PREDICTED: kinesin-like protein KIF6

GO: NA

KEGG:

id description
K10397 KIF6_9; kinesin family member 6/9

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004087 True 1725 mRNA 0.55 14 32728660 32774812

Neighbor

gene id symbol gene type direction distance location
AMCG00004085 NA coding upstream 128068 32598453 ~ 32600592 (+)
AMCG00004084 mocs1 coding upstream 132259 32583540 ~ 32596401 (+)
AMCG00004086 NA coding upstream 145961 32571579 ~ 32582699 (+)
AMCG00004082 NA coding upstream 169295 32558979 ~ 32559365 (+)
AMCG00004081 bre coding upstream 198821 32499473 ~ 32529839 (+)
AMCG00004089 NA coding downstream 39931 32814743 ~ 32836681 (+)
AMCG00004088 NA coding downstream 64152 32838964 ~ 32844650 (+)
AMCG00004093 NA coding downstream 101998 32876810 ~ 32900670 (+)
AMCG00004092 gnmt,LOC107748599,LOC107566124 coding downstream 162593 32937405 ~ 32946916 (+)
AMCG00004099 NA coding downstream 357543 33132355 ~ 33135491 (+)
G5569 NA non-coding upstream 116609 32611833 ~ 32612051 (+)
G5529 NA non-coding upstream 341125 32384435 ~ 32387535 (+)
G5527 NA non-coding upstream 344981 32383409 ~ 32383679 (+)
G5522 NA non-coding upstream 378557 32348390 ~ 32350103 (+)
G5501 NA non-coding upstream 418748 32309505 ~ 32309912 (+)
G5662 NA non-coding downstream 663516 33438328 ~ 33445420 (+)
G5680 NA non-coding downstream 698224 33473036 ~ 33473330 (+)
G5681 NA non-coding downstream 700030 33474842 ~ 33475047 (+)
G5688 NA non-coding downstream 791361 33566173 ~ 33567479 (+)
G5707 NA non-coding downstream 823080 33597892 ~ 33600011 (+)
AMCG00004079 NA other upstream 326277 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 1833833 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 2421485 30296867 ~ 30307175 (+)
G5245 NA other upstream 2457136 30271210 ~ 30271524 (+)
AMCG00004011 ccnc other upstream 3187302 29527414 ~ 29541358 (+)
G5642 NA other downstream 355308 33130120 ~ 33131186 (+)
AMCG00004138 fkbp1b other downstream 2078051 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 2977638 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 3252467 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 3486976 36261788 ~ 36278234 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC118963006 LOC106570995 coding NW_023494274.1 JAAXML020000360.1 18236 ~ 19872 (-)