AMCG00004113 (rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565)


Basic Information

Item Value
gene id AMCG00004113
gene name rhob,LOC105888539,LOC103025336,LOC105907285,LOC106607565
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 33767046 ~ 33767636 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004113
ATGGCTGCTATTCGGAAAAAGCTGGTGGTGGTCGGGGACGGCGCCTGCGGGAAGACCTGCTTGCTCATCGTGTTCAGCAAAGACGAGTTCCCCGAAGTGTACGTGCCCACCGTGTTTGAAAACTACGTGGCGGACATCGAggtggacagcaagcaagtggAGCTGGCGCTGTGGGACACCGCCGGCCAGGAAGACTACGACCGCCTGCGCCCGCTCTCCTACCCGGACACCGACGTGATCCTCATGTGCTTCTCGGTGGACAGCCCGGACTCGCTGGAGAACATCCCCGAGAAGTGGGTGCCGGAGGTGAAGCACTTCTGCCCCAACGTGCCCATCATCCTGGTCGCCAACAAGAAGGACCTGAGGAACGACGAGAACGTCCGGAACGAGCTGGCCCGGATGAAGCAGGAGCCGGTGAAGACGGAGGACGGGCGGGCCATGGCGGTGCGCATCGGGGCGTACGACTACCTGGAGTGCTCCGCCAAGACCAAGGACGGGGTGCGGGAGGTGTTCGAGACCGCCACCCGGGCCGCACTGCAGAAGCGCTCCCGGCCGTCGGGCGGATGTGTCAACTGCTGCAAGCTGCTGTGA

Function

symbol description
rhob Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Involved in several processes, including cellular response to hydrogen peroxide; cellular response to ionizing radiation; and regulation of cell migration. Located in cleavage furrow and endosome membrane. Biomarker of breast cancer.

NR:

description
PREDICTED: rho-related GTP-binding protein RhoB

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07856 RHOB; Ras homolog gene family, member B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004113 True 591 mRNA 0.64 1 33767046 33767636

Neighbor

gene id symbol gene type direction distance location
AMCG00004110 NA coding upstream 5589 33747909 ~ 33761457 (+)
AMCG00004109 NA coding upstream 201183 33561024 ~ 33565863 (+)
AMCG00004108 5nt1a,LOC105899417,LOC102795473 coding upstream 314374 33435750 ~ 33452672 (+)
AMCG00004100 osr1 coding upstream 519482 33241032 ~ 33247564 (+)
AMCG00004101 NA coding upstream 624508 33137636 ~ 33142538 (+)
AMCG00004115 NA coding downstream 137655 33905291 ~ 33912885 (+)
AMCG00004121 NA coding downstream 351935 34119571 ~ 34130023 (+)
AMCG00004122 NA coding downstream 363490 34131126 ~ 34133612 (+)
AMCG00004125 NA coding downstream 863585 34631221 ~ 34638669 (+)
AMCG00004124 klhl29,LOC107738561,LOC107678777 coding downstream 898756 34666392 ~ 34685790 (+)
G5720 NA non-coding upstream 139539 33626367 ~ 33627507 (+)
G5707 NA non-coding upstream 167035 33597892 ~ 33600011 (+)
G5688 NA non-coding upstream 199567 33566173 ~ 33567479 (+)
G5681 NA non-coding upstream 291999 33474842 ~ 33475047 (+)
G5680 NA non-coding upstream 293716 33473036 ~ 33473330 (+)
G5750 NA non-coding downstream 1953 33769589 ~ 33771848 (+)
G5768 NA non-coding downstream 124838 33892474 ~ 33893143 (+)
G5787 NA non-coding downstream 310715 34078351 ~ 34080785 (+)
G5788 NA non-coding downstream 314190 34081826 ~ 34090122 (+)
G5804 NA non-coding downstream 524635 34292271 ~ 34292501 (+)
G5642 NA other upstream 635860 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 1364663 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 2872219 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 3459871 30296867 ~ 30307175 (+)
G5245 NA other upstream 3495522 30271210 ~ 30271524 (+)
AMCG00004138 fkbp1b other downstream 1085227 34852863 ~ 34870320 (+)
AMCG00004158 NA other downstream 1984814 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 2259643 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 2494152 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 2919994 36687630 ~ 36697885 (+)

Expression


Co-expression Network