AMCG00004141 (LOC107717234,LOC107594081,LOC107552040,LOC107653853)


Basic Information

Item Value
gene id AMCG00004141
gene name LOC107717234,LOC107594081,LOC107552040,LOC107653853
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35239232 ~ 35248925 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004141
CACAGACAGAAACTGGAAGACCCGCCAAAGCctggtttgttttcagaacGACTGAGTGAGCTGGAGCGCCTTCGACAGACCACAATGAGGGTCACTGTCCCCACCCAAAGCCCCCGACCATCCCTCAACAACGCACCAGCATCCTTTAACCCACAGGGCCAAACCCAGATCTCagACCCCAGGCAGTCCCAGTCCTCACCTCCCTGGTCTTATGACCAACCCTATACTCCGTATCTGAGCCAGATGACGCCACCATCCATCCATTCCACAACCCCCCTCTCCTCCACCCGAGCCACAGGGCTTCCTGCTATCAGTGATGTGCCAAGACGACTCCCAGGTGCTTCGGACCTGAGCCCGTTTTCAGACCCTCGGCCATTTGAGCGCCAATTCGCCGGGCTCTCCTCTCTCACAGATAGCCGATTCCCCAGCCCCAGAATGCACTATCCTGCCACATTTACCTACACACCCACACCCGTCACGTCAGGCATGTCTCTGGGGATGTCCACAACCACCCACTACCACACCTACCTGCCTCCGCCTTATCCAGGCTCCACCCAGAACCAAAGTGGACCCTTCCAGACCAGCAGCACACCCTATCTCTACTATGGAGCATCCTCTGGGTCATACCAATTCTCCATGGTGCCAGGGGGGGATCGCTCACCTTCCAGGATGCTCCCACCTTGCACTAGTGCCTCCACCGGCAGCTCTCTAATCAACCCCAACCTCCCCAACCAAAATGATGGGGTAGATGCTGATGGAAGCCACAGTAGCTCTCCGACTGTGTTAAACTCGAGTGGAAGAATGGACGAATCAGTTTGGCGGCCATATTGA

Function

NR:

description
PREDICTED: runt-related transcription factor 2-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004141 True 831 mRNA 0.57 3 35239232 35248925

Neighbor

gene id symbol gene type direction distance location
AMCG00004140 runx2,LOC107378134,LOC102312376 coding upstream 28358 35207531 ~ 35210874 (+)
AMCG00004139 NA coding upstream 66200 35172476 ~ 35173032 (+)
AMCG00004137 cdc5l,LOC107594083,LOC106599718 coding upstream 261599 34964466 ~ 34977633 (+)
AMCG00004128 NA coding upstream 405117 34820168 ~ 34834115 (+)
AMCG00004127 NA coding upstream 430810 34798389 ~ 34808422 (+)
AMCG00004149 NA coding downstream 108497 35357422 ~ 35359998 (+)
AMCG00004145 NA coding downstream 149455 35398380 ~ 35406953 (+)
AMCG00004150 NA coding downstream 202146 35451071 ~ 35455522 (+)
AMCG00004151 NA coding downstream 208229 35457154 ~ 35458783 (+)
AMCG00004157 NA coding downstream 394071 35642996 ~ 35684393 (+)
G5867 NA non-coding upstream 343571 34894102 ~ 34895661 (+)
G5808 NA non-coding upstream 857133 34381868 ~ 34382099 (+)
G5804 NA non-coding upstream 946731 34292271 ~ 34292501 (+)
G5788 NA non-coding upstream 1149110 34081826 ~ 34090122 (+)
G5787 NA non-coding upstream 1158447 34078351 ~ 34080785 (+)
G5914 NA non-coding downstream 52178 35301103 ~ 35306949 (+)
G6002 NA non-coding downstream 206751 35455676 ~ 35455887 (+)
G6007 NA non-coding downstream 216937 35465862 ~ 35466655 (+)
G6067 NA non-coding downstream 571330 35820255 ~ 35820483 (+)
G6102 NA non-coding downstream 912681 36161606 ~ 36165870 (+)
AMCG00004138 fkbp1b other upstream 368912 34852863 ~ 34870320 (+)
G5642 NA other upstream 2108046 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 2836849 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 4344405 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 4932057 30296867 ~ 30307175 (+)
AMCG00004158 NA other downstream 503525 35752450 ~ 35766180 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 778354 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 1012863 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 1438705 36687630 ~ 36697885 (+)
G6314 NA other downstream 1525076 36774001 ~ 36774523 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000310_01414325_01452698 RUNX2, RUNX2A coding CI01000310 null 1414325 ~ 1452698 (+)