AMCG00004158


Basic Information

Item Value
gene id AMCG00004158
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 35752450 ~ 35766180 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004158
GTGTGAGTCATGTGTGTGGCGTGTCAACGAGGGCGGGGCTTCAGCTGATGGGCTGCTGTGATTGGTCGCCACGGTACCAGCTAGACAGGCAGCGGCCCCCAGAGGTGGGCAAGAGAGTGTGCCTGTGGACAGTGCAGGAGGTGTACGACTGGGTGAGAGTGTGCTACCCTTCCCGCCAGGCCGCTTTCCTCCTAGCAATTGTCAATCATTCTATATCAgGTCGGGCTCTTCTGAGGTTAACCGATAGCAAGCTTGAGAGGATGGGTGTTGGGCAGGAGCAGCACAAGGAGATTCTCCATGATGTGATGATCCTGAGAGTACACGAGGAGCTGGAAAACCTCAATGACATTGTCTCTGactGTTTCACAACATGATCAGGCATACACCaagaaggatttattttatgcacGTATCTGCTCTTCCATCTGAAAGAGAATGTTGGCCTTCAGAACCAGTGACCTGAGGAACACATGCAGTTGATTCCCAGTGCTGCGCTCTCTGCTCGGCTGGCTCTATGCATCAAGTGCCTTTTCCTagctttgtattgctcttactTTGTAATACTCAATAAACTGCCTGGCTGCTTTTATAAATGGTCGGACCAATAACTAACAAAGGGGAAACATCCCATTTAACAAGGGATGTAGTGCAGCCTTCATCTGGACAAAATGCCATTATCCGAGATACAGCACTGATTTGGGATAGTTAATGGTTCTGTGAATTACTCTCTTGAGATCCTGTCTGAATTAAAATGGGGAGTAGGTAAATTAGTTCAGAGATTCGAACATTTGCTCATGGATATAATTTAGATAATAGCTGCATGTTACTTTGTATCTATTAAGGAATAGTAGGGGATTTAATGAGAAATATTTTAAGGGAGTTGTTTAGTCAGAGAGTTAAAACCCTTTATCTGCACTTTATGCCCTGCTTACTGTGGCAgtggggaaaaagaaaacaagatgtggttttttttttcctttatgtgttagttttaacatttgtacattttaccaCTGCTTTAGGATGCCTCATGTGGTATCATGGGGTTCAAATCCAGATTTGATTACTGTTATGTTACTTAAACATAGGTATGAGCAGCACCCTCAATAATTTACaagcatttaaaagtaatttcacaGTTATATGAAGTTATGATTTTCAGTTTACTGTGAATatctattgttttttatttttattttacttaaacacATATTGATTCCCTGACATTTAGATTAAAACAATTGATTGATGTAGTCAATCCATgctttattgaataaaat
>TU7437
GTGAGACCCGCAGAGGGTTAGATAGTAACAATTGGTTGCTGCTTCTTCTCTGGTGATCCTTTTGCAAAATAAGACCATTTAACCAGTAACGAAAATGGTCCTATACCTGCAATACTCGACCACTATGGCAGCAGATGAGTCAGTACATGTATAATTTCCCCATATCAAATGAAATCATTCCTCCGAGAGACAGCGCTAGTGGAAAACGTGACTTTCCCAGGTGTGCCAGGAGACAGGCAACGCAGGTGACGGTCAATGGAAGGGAAAGTGTAAAGCTGCCCACAACAGTGAACAAAGAAGCTGTATTGACACTGAAACAAAGAGATCTGAGGGTTCTTTAACTAGGAACAGAGCATATGTCGAAGGACAGGCAGCGGCCCCCAGAGGTGGGCAAGAGAGTGTGCCTGTGGACAGTGCAGGAGGTGTACGACTGGGTGAGAGTGTGCTACCCTTCCCGCCAGGCCGCTTTCCTCCTAGCAATTGTCAATCATTCTATATCAgGTCGGGCTCTTCTGAGGTTAACCGATAGCAAGCTTGAGAGGATGGGTGTTGGGCAGGAGCAGCACAAGGAGATTCTCCATGATGTGATGATCCTGAGAGTACACGAGGAGCTGGAAAACCTCAATGACATTGTCTCTGactGTTTCACAACATGATCAGGCATACACCaagaaggatttattttatgcacGTATCTGCTCTTCCATCTGAAAGAGAATGTTGGCCTTCAGAACCAGTGACCTGAGGAACACATGCAGTTGATTCCCAGTGCTGCGCTCTCTGCTCGGCTGGCTCTATGCATCAAGTGCCTTTTCCTagctttgtattgctcttactTTGTAATACTCAATAAACTGCCTGGCTGCTTTTATAAATGGTCGGACCAATAACTAACAAAGGGGAAACATCCCATTTAACAAGGGATGTAGTGCAGCCTTCATCTGGACAAAATGCCATTATCCGAGATACAGCACTGATTTGGGATAGTTAATGGTTCTGTGAATTACTCTCTTGAGATCCTGTCTGAATTAAAATGGGGAGTAGGTAAATTAGTTCAGAGATTCGAACATTTGCTCATGGATATAATTTAGATAATAGCTGCATGTTACTTTGTATCTATTAAGGAATAGTAGGGGATTTAATGAGAAATATTTTAAGGGAGTTGTTTAGTCAGAGAGTTAAAACCCTTTATCTGCACTTTATGCCCTGCTTACTGTGGCAgtggggaaaaagaaaacaagatgtggttttttttttcctttatgtgttagttttaacatttgtacattttaccaCTGCTTTAGGATGCCTCATGTGGTATCATGGGGTTCAAATCCAGATTTGATTACTGTTATGTTACTTAAACATAGGTATGAGCAGCACCCTCAATAATTTACaagcatttaaaagtaatttcacaGTTATATGAAGTTATGATTTTCAGTTTACTGTGAATatctattgttttttatttttattttacttaaacacATATTGATTCCCTGACATTTAGATTAAAACAATTGATTGATGTAGTCAATCCATgctttattgaataaaat

Function

GO: NA

KEGG:

id description
ko04110 Cell cycle

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004158 False 1280 mRNA 0.41 4 35752450 35766180
TU7437 True 1562 TUCP 0.41 6 35752533 35766180

Neighbor

gene id symbol gene type direction distance location
AMCG00004157 NA coding upstream 68057 35642996 ~ 35684393 (+)
AMCG00004151 NA coding upstream 293667 35457154 ~ 35458783 (+)
AMCG00004150 NA coding upstream 296928 35451071 ~ 35455522 (+)
AMCG00004145 NA coding upstream 345497 35398380 ~ 35406953 (+)
AMCG00004149 NA coding upstream 392452 35357422 ~ 35359998 (+)
AMCG00004163 NA coding downstream 69593 35835773 ~ 35837710 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding downstream 301400 36067580 ~ 36073621 (+)
AMCG00004159 NA coding downstream 348321 36114501 ~ 36128960 (+)
AMCG00004165 NA coding downstream 367826 36134006 ~ 36158549 (+)
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding downstream 421313 36187493 ~ 36211948 (+)
G6007 NA non-coding upstream 285795 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 296563 35455676 ~ 35455887 (+)
G5875 NA non-coding upstream 402423 34899636 ~ 35350027 (+)
G5914 NA non-coding upstream 445501 35301103 ~ 35306949 (+)
G5867 NA non-coding upstream 856789 34894102 ~ 34895661 (+)
G6067 NA non-coding downstream 54075 35820255 ~ 35820483 (+)
G6102 NA non-coding downstream 395426 36161606 ~ 36165870 (+)
G6224 NA non-coding downstream 729660 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 760488 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 787724 36553904 ~ 36555108 (+)
AMCG00004138 fkbp1b other upstream 882130 34852863 ~ 34870320 (+)
G5642 NA other upstream 2621264 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3350067 32400405 ~ 32402383 (+)
AMCG00004056 ypel5,LOC107568027,LOC103458748,LOC102788175,LOC102210471 other upstream 4857623 30887995 ~ 30894827 (+)
AMCG00004039 NA other upstream 5445275 30296867 ~ 30307175 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other downstream 261099 36027279 ~ 36045282 (+)
AMCG00004167 NA other downstream 495608 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 921450 36687630 ~ 36697885 (+)
G6314 NA other downstream 1007821 36774001 ~ 36774523 (+)
G6328 NA other downstream 1095367 36861547 ~ 36891746 (+)

Expression


Co-expression Network