AMCG00004166


Basic Information

Item Value
gene id AMCG00004166
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 36237806 ~ 36252898 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004166
TTACAGGCTCCTTGATGGGCATTGGGGATGTCATTTCACAGCAGCTGATTGAGAGAAAAGGTTTGACCAACCACAGTGTCCAGAGGACAGCGAAAATGATGAGCATTggattctgttttgttGGCCCTGTATTGGGAGGATGGTACAAGGCTCTCGACAAGCTTGTTCCAGGAGCAAGCAAAACTGTGGCTTTGAAGAAGATGATTTTAGACCAGGCGGTGTTTGCTCCCTGCTTTCTTGGCTGTTTCCTGACTATCACTGGCACCCTGAATGGACTGACAGTGGAGAAAAACCTGACTAAACTGAAGAGGGACTACCCAGATGCCCTTATTTCAAACTACTATctttgGCCACCTGTGCAGATTgtaaatttttattttataccacTACATTACAGGCTGGCTGTGGTCCAGGTTGTGGCCATAATTTGGAACTCATACCTGTCCTGGAAAGCCAATAAGATGTAATGGATTGATTTTATAAATCCGTCCTATCTCAGAGATGCAAATAAACGATTGCAGAGTGTTTCGCTTCAGTGAAAGATATGCAAACACTGAGTGCATATGAAAAGTGAGCCTTACACTTGGGGTAGTCAAGAACATTTTACTAATTACATTCACTTCCAGATGGGGAGGCAcacctctgcaaaacatgtTGTGTCGTGTAGCGAAAACAGATTCAGTAAACACTGTACTGATACTCTTTTATTCCTCTAATTATGCTGCTTTTTTAAGCTCTGTTACTGAGAGTATTCAGcctaacaatatttaaaatttaaaaccaCCATTATACTTTCTTTTGACCCCCTGCTAGTCTGACACCCACTAATTACAGTAGTAATCCACGGTGCTGGCTTTTGAATTGACATTTGAATTACAAACCCACCATCAAATACTATTTTTGAAATCTGCAATTGTCGCGCAGGTAGAAGTTTTGCTTTGATCCATGCCTCTGTCATGTTAATAATAGAATTTGTTATTTCAATTGTATATGACATGTTCCTGCTATTAAAAAATACCCAATGCCtgtaatattaaagaaaatgtggaatgtcaaaataaagacaatatgttttaaatca

Function

GO:

id name namespace
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13348 MPV17; protein Mpv17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004166 True 1081 mRNA 0.39 6 36237806 36252898

Neighbor

gene id symbol gene type direction distance location
AMCG00004164 si:ch211-243j20.2,LOC108429346,LOC107676254,LOC108279217,LOC107602209,LOC103363074 coding upstream 25858 36187493 ~ 36211948 (+)
AMCG00004165 NA coding upstream 79257 36134006 ~ 36158549 (+)
AMCG00004159 NA coding upstream 108846 36114501 ~ 36128960 (+)
AMCG00004161 LOC107558762,LOC108441130,LOC106607809,LOC105897019,LOC107727350,LOC101885478,LOC103026919 coding upstream 164185 36067580 ~ 36073621 (+)
AMCG00004163 NA coding upstream 400096 35835773 ~ 35837710 (+)
AMCG00004170 ift172,LOC105901225,LOC107716708 coding downstream 95675 36348573 ~ 36390512 (+)
AMCG00004173 msra,LOC106571446 coding downstream 202093 36454991 ~ 36469024 (+)
AMCG00004174 NA coding downstream 248928 36501826 ~ 36502116 (+)
AMCG00004176 slc25a27,LOC107553473 coding downstream 410904 36663802 ~ 36669648 (+)
AMCG00004180 NA coding downstream 489729 36742627 ~ 36746065 (+)
G6102 NA non-coding upstream 71936 36161606 ~ 36165870 (+)
G6067 NA non-coding upstream 417323 35820255 ~ 35820483 (+)
G6007 NA non-coding upstream 771151 35465862 ~ 35466655 (+)
G6002 NA non-coding upstream 781919 35455676 ~ 35455887 (+)
G5914 NA non-coding upstream 930857 35301103 ~ 35306949 (+)
G6224 NA non-coding downstream 242942 36495840 ~ 36520594 (+)
G6225 NA non-coding downstream 273770 36526668 ~ 36539067 (+)
G6240 NA non-coding downstream 301006 36553904 ~ 36555108 (+)
G6242 NA non-coding downstream 303208 36556106 ~ 36557331 (+)
G6247 NA non-coding downstream 312672 36565570 ~ 36593153 (+)
AMCG00004160 LOC106571404,LOC106607809,LOC105897019 other upstream 192524 36027279 ~ 36045282 (+)
AMCG00004158 NA other upstream 471626 35752450 ~ 35766180 (+)
AMCG00004138 fkbp1b other upstream 1367486 34852863 ~ 34870320 (+)
G5642 NA other upstream 3106620 33130120 ~ 33131186 (+)
AMCG00004079 NA other upstream 3835423 32400405 ~ 32402383 (+)
AMCG00004167 NA other downstream 8890 36261788 ~ 36278234 (+)
AMCG00004179 ptrhd1,LOC103399259 other downstream 434732 36687630 ~ 36697885 (+)
G6314 NA other downstream 521103 36774001 ~ 36774523 (+)
G6328 NA other downstream 608649 36861547 ~ 36891746 (+)
G6369 NA other downstream 746459 36999357 ~ 37000158 (+)

Expression


Co-expression Network